MmuALTD1017259-1/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000030102 | Itpr1
Description
inositol 1,4,5-trisphosphate receptor 1 [Source:MGI Symbol;Acc:MGI:96623]
Coordinates
chr6:108238299-108241334:+
Coord C1 exon
chr6:108238299-108238325
Coord A exon
NA
Coord C2 exon
chr6:108241264-108241334
Length
0 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGC
5' ss Score
8.15
3' ss Seq
ATTTGTTTTTCTTTTTGCAGCTT
3' ss Score
10.59
Exon sequences
Seq C1 exon
CATTGACTTCAGTACTGTACAGCAGTG
Seq A exon
NA
Seq C2 exon
CTTGGTTGATGACCGTTGTGTTGTACAGCCAGAAGCCGGGGACCTTAACAATCCACCCAAGAAATTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030102-11-5,12-5-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence exclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=FE(3.8=100)
A:
NA
C2:
PF087096=Ins145_P3_rec=FE(10.6=100)
Main Inclusion Isoform:
ENSMUST00000032192fB11680
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGACTTCAGTACTGTACAGCA
R:
TCTGAATTTCTTGGGTGGATTGT
Band lengths:
95-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types