GgaEX1030849 @ galGal4
Exon Skipping
Gene
ENSGALG00000008294 | ITPR1
Description
inositol 1,4,5-triphosphate receptor, type 1 [Source:RefSeq peptide;Acc:NP_001167530]
Coordinates
chr12:18398631-18424154:+
Coord C1 exon
chr12:18398631-18398738
Coord A exon
chr12:18402504-18402574
Coord C2 exon
chr12:18424039-18424154
Length
71 bp
Sequences
Splice sites
3' ss Seq
GATTTCTCATTTCTTTGCAGCCT
3' ss Score
8.8
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GGGCTCCAAGCCAGAGATGACCGACAAGATGTCGAGCTTCCTTCATATTGGAGATATTTGTTCTCTCTATGCAGAGGGCTCAACCAATGGATTTATTAGCACTTTGGG
Seq A exon
CCTTGTGGATGACCGGTGTGTTGTACAGCCAGAAGCAGGTGACCTTAATAACCCACCCAAAAAGTTCAGAG
Seq C2 exon
ATTGCCTGTTCAAACTATGTCCCATGAACCGGTACTCTGCTCAAAAACAGTTCTGGAAAGCAGCAAAGCCAGGAGCCAACAGCACGACAGATGCAGTGCTGCTCAACAAGCTTCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008294-'1-7,'1-4,4-7
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=0.165 C2=0.000
Domain overlap (PFAM):
C1:
PF087096=Ins145_P3_rec=PU(11.9=73.0)
A:
PF087096=Ins145_P3_rec=FE(10.6=100)
C2:
PF087096=Ins145_P3_rec=FE(16.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCAGAGATGACCGACAAGA
R:
TGGCTTTGCTGCTTTCCAGAA
Band lengths:
171-242
Functional annotations
There are 1 annotated functions for this event
PMID: 9808459
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: western blot. ELM ID: ELMI001694; ELM sequence: PPKKF; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]