GgaEX0012034 @ galGal3
Exon Skipping
Gene
ENSGALG00000008309 | CCDC146
Description
NA
Coordinates
chr1:13756603-13760794:-
Coord C1 exon
chr1:13760764-13760794
Coord A exon
chr1:13758432-13758519
Coord C2 exon
chr1:13756603-13756769
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCTAATTTCTTCCAGAAA
3' ss Score
9.97
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
CAGAGAAGGACTTTATTACCAGTAGAAGCAG
Seq A exon
AAATGTGTACAGAGGCACAAATAAAGCAACAGCAGCCATAAAGGTGAAATGTGTATTCTCAAATATTCAGCAATTTTGTAGATGAGAA
Seq C2 exon
ATCTCCAGAAAATGAGTCAAGCTGGTGATGAAAGTTCCAGTTCCGATGAAAAAGAATTGGAAGTCGAGAAGGAGCAACCTATCTGTGCTTTAGCTCCAACAGTATATACCCGAGACGAAGGATCCACTGATGTAACATCAAGTCCTGCATTTCAGTGTTTAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008309-'1-1,'1-0,4-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.615
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGACTTTATTACCAGTAGAAGCA
R:
TGATGTTACATCAGTGGATCCTTCG
Band lengths:
167-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]