GgaEX0012034 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BQW6]
Coordinates
chr1:12601116-12605350:-
Coord C1 exon
chr1:12605277-12605350
Coord A exon
chr1:12602945-12603032
Coord C2 exon
chr1:12601116-12601282
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCTAATTTCTTCCAGAAA
3' ss Score
9.97
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
AACTGGAAAAGACTTGGAGAAGGACGACAATGACAGCAGAAGGCAGAGAAGGACTTTATTACCAGTAGAAGCAG
Seq A exon
AAATGTGTACAGAGGCACAAATAAAGCAACAGCAGCCATAAAGGTGAAATGTGTATTCTCAAATATTCAGCAATTTTGTAGATGAGAA
Seq C2 exon
ATCTCCAGAAAATGAGTCAAGCTGGTGATGAAAGTTCCAGTTCCGATGAAAAAGAATTGGAAGTCGAGAAGGAGCAACCTATCTGTGCTTTAGCTCCAACAGTATATACCCGAGACGAAGGATCCACTGATGTAACATCAAGTCCTGCATTTCAGTGTTTAGATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008309_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.643
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGACAATGACAGCAGAAGGC
R:
GTGGATCCTTCGTCTCGGGTA
Band lengths:
178-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]