GgaEX0012054 @ galGal3
Exon Skipping
Gene
ENSGALG00000008312 | PION
Description
NA
Coordinates
chr1:13651591-13655516:+
Coord C1 exon
chr1:13651591-13651660
Coord A exon
chr1:13652303-13652349
Coord C2 exon
chr1:13655412-13655516
Length
47 bp
Sequences
Splice sites
3' ss Seq
TATTTTGTGTTGTTTTAAAGACA
3' ss Score
6.53
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
TTTCTTTATCCAGTGGAAGACAGAAATAGTTCTACAGAAAGTCATCTTTTGCTCGTTTCAGAAGATAAAT
Seq A exon
ACATCGAACAATTCGATATTCACGTTGCAGAAGAGGAACACAGAGTG
Seq C2 exon
GTGATTCAGAACTCAGGTCAGCTTCCAAGAGCCAGAGTTGCAGATGATCTCATTTGGGCACAGTGGGATATGACAGAACAAAGACTCTTCTACATTGTTCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008312-'5-7,'5-5,6-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGTGGAAGACAGAAATAGTTCT
R:
TGTCATATCCCACTGTGCCCA
Band lengths:
137-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]