RnoEX0040226 @ rn6
Exon Skipping
Gene
ENSRNOG00000028801 | Gsap
Description
gamma-secretase activating protein [Source:RGD Symbol;Acc:1563271]
Coordinates
chr4:10478959-10485402:-
Coord C1 exon
chr4:10485333-10485402
Coord A exon
chr4:10483547-10483596
Coord C2 exon
chr4:10478959-10479063
Length
50 bp
Sequences
Splice sites
3' ss Seq
TCCCCGTTTATTTTTTAAAGATA
3' ss Score
7.18
5' ss Seq
GTGGTAAAG
5' ss Score
3.86
Exon sequences
Seq C1 exon
TTCCTCTACCCACAAGCTGAAAGTCATCTTCTTGCACAGAACCACCTGTTACTGATTTCAGAAGAGAAAT
Seq A exon
ATATTGAACGGTTTCATATCCAGATCACCAGAGAAGATGGAAACAGAGTG
Seq C2 exon
GTAATTAGAAATTCTAGCCATCTCCCAAGAGAAAGAATAGCTGAAGACTTCGTTTGGGCTCAGTGGGATGTGTCAGAGCAGAGAATCCACTACATTGAACTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028801-'8-13,'8-11,9-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCTACCCACAAGCTGAAAGT
R:
TGCTCTGACACATCCCACTGA
Band lengths:
148-198
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]