GgaEX0012341 @ galGal3
Exon Skipping
Gene
ENSGALG00000008461 | F1P302_CHICK
Description
NA
Coordinates
chr1:11504934-11506555:+
Coord C1 exon
chr1:11504934-11505008
Coord A exon
chr1:11505605-11505751
Coord C2 exon
chr1:11506449-11506555
Length
147 bp
Sequences
Splice sites
3' ss Seq
ACTTACTTTGCCTAATTTAGTTA
3' ss Score
6.08
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
GAATAAGCATATCTGTGGAGGTACTCTGGTAAAGGAAGAGTGGGTTCTCACAGCAAGACAGTGTTTCCCATCTCG
Seq A exon
TTACAAAGATCTGAAAGACTACAAAGCTTGGCTTGGAGTCCATAATATCAAAGGAAAGGGAGAAGAGAAGCACAGGCAAGTTCGGAATATCTCCCAGCTGGTATACGGTCCGGCAGGATCAGATCTGGTTTTACTAAAACTTAGCAG
Seq C2 exon
ACCTGCGATATTGACAAATTTTGTAGAAATAATTCGATTGCCCATTTCTGGATGTACCATACCAGAGAAGACCAGTTGCAGTGTTTTTGGATGGGGATACACTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008461-'16-19,'16-18,17-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(11.2=100)
A:
PF0008921=Trypsin=FE(21.9=100)
C2:
PF0008921=Trypsin=FE(16.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCTGGTAAAGGAAGAGTGGGT
R:
TCCAGTGTATCCCCATCCAAA
Band lengths:
159-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]