RnoEX0041803 @ rn6
Exon Skipping
Gene
ENSRNOG00000007027 | Hgf
Description
hepatocyte growth factor [Source:RGD Symbol;Acc:2794]
Coordinates
chr4:15439910-15441784:-
Coord C1 exon
chr4:15441710-15441784
Coord A exon
chr4:15440544-15440690
Coord C2 exon
chr4:15439910-15440016
Length
147 bp
Sequences
Splice sites
3' ss Seq
CATGTTAATTTTCTATCTAGAAA
3' ss Score
7.4
5' ss Seq
TCGGTGATT
5' ss Score
3.98
Exon sequences
Seq C1 exon
GAATAAACACATCTGTGGGGGATCATTGATAAAGGAAAGTTGGGTTCTTACTGCAAGGCAATGTTTTCCAGCTAG
Seq A exon
AAACAAAGACTTGAAAGACTATGAAGCTTGGCTTGGAATCCATGATGTCCATGAGAGAGGCGAGGAGAAACGCAAACAGATCTTAAACATTTCCCAGCTAGTCTATGGACCTGAAGGCTCAGATTTGGTTTTACTGAAGCTTGCTCG
Seq C2 exon
CCCTGCAATCCTGGATAACTTTGTCAGTACAATTGATTTACCTAGTTATGGCTGTACAATCCCTGAAAAGACTACTTGCAGTATTTACGGCTGGGGCTACACTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007027-'15-21,'15-20,16-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008921=Trypsin=FE(11.2=100)
A:
PF0008921=Trypsin=FE(21.9=100)
C2:
PF0008921=Trypsin=FE(16.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATCTGTGGGGGATCATTGA
R:
AGTGTAGCCCCAGCCGTAAAT
Band lengths:
171-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]