GgaEX0013011 @ galGal3
Exon Skipping
Gene
ENSGALG00000008898 | Q6R6I2_CHICK
Description
NA
Coordinates
chr17:1395005-1400669:-
Coord C1 exon
chr17:1400559-1400669
Coord A exon
chr17:1397784-1398055
Coord C2 exon
chr17:1395005-1395073
Length
272 bp
Sequences
Splice sites
3' ss Seq
AAATGGATTCTGCTCTGCAGCCC
3' ss Score
5.01
5' ss Seq
CATGTGAGA
5' ss Score
3.73
Exon sequences
Seq C1 exon
GATAGAAAAAGTGGTAGAGCAGAACCTGACCCTAAAAAGAAAGCCACTTTTAGGTCCATCACCTCCACCCTGGCCTCCAGCTTCAAGAGACGTAGGTCCTCCAAGGATACG
Seq A exon
CCCTGCAGAATGGTCCCTCAGGAGTGCCAGAGAGACAGGCTGGCACCATGGAGCCAAGACAGCCCCGGGAAGCTGCCACCCCACTCTGAACGTCCTAGCGCCCACCATCACCCGAGCTGCACAGCCTCTCCGCGGCACATCATCCCCACCGCCCCAGGAGGAGATGCATGTGTTCCCCATAGGCAGCTCCTGCAACTCGAATAGCACTCGCAGAGCTGACGTACTGCCATCCATCGCAGCCACCCACGCTACCGCAACCCCACAGAAGCCAT
Seq C2 exon
CAATACCATCCCACTGACATCACCGGCCAGCTCAACCTCTCCGACCCCTCCGTCAGCACTGTGGTGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008898-'22-28,'22-27,23-28
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.681 A=0.970 C2=0.568
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAAGTGGTAGAGCAGAACCTGA
R:
CACCACAGTGCTGACGGAG
Band lengths:
172-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]