GgaEX0013011 @ galGal4
Exon Skipping
Gene
ENSGALG00000008898 | GRIN1
Description
glutamate [Source:RefSeq peptide;Acc:NP_996862]
Coordinates
chr17:1002685-1012389:-
Coord C1 exon
chr17:1012244-1012389
Coord A exon
chr17:1006261-1007030
Coord C2 exon
chr17:1002685-1004048
Length
770 bp
Sequences
Splice sites
3' ss Seq
AAATGGATTCTGCTCTGCAGCCC
3' ss Score
5.01
5' ss Seq
TAGGTTGAA
5' ss Score
-3.8
Exon sequences
Seq C1 exon
GTGTGTTTATGCTGGTGGCTGGAGGTATTGTTGCCGGGATATTTTTAATATTCATAGAAATAGCTTACAAAAGGCATAAGGACGCGCGGAGGAAGCAGATGCAGCTGGCGTTTGCGGCCGTTAATGTGTGGAGGAAAAACCTGCAG
Seq A exon
CCCTGCAGAATGGTCCCTCAGGAGTGCCAGAGAGACAGGCTGGCACCATGGAGCCAAGACAGCCCCGGGAAGCTGCCACCCCACTCTGAACGTCCTAGCGCCCACCATCACCCGAGCTGCACAGCCTCTCCGCGGCACATCATCCCCACCGCCCCAGGAGGAGATGCATGTGTTCCCCATAGGCAGCTCCTGCAACTCGAATAGCACTCGCAGAGCTGACGTACTGCCATCCATCGCAGCCACCCACGCTACCGCAACCCCACAGAAGCCATGTGAGACGCATAAACCACACAGACACCTTCCGAGCCGGCACATTTCGTACAGACACGTACCGAGACGCACAGATCCCTTAGCCCACACTGCAGACGTCATCAGCCCCCACAGCCCCACTGCCAGCCCGCGGGCCCCCAGGCACAGCACAGCACACGTCCCACGCCACCGCCAAGCGAGGGCCCCGCGAGCGTGGGGACGATGCCAGAACTGGTCGAGGATGGAGGGGGTGCATGGAAAAGGTCACCTTTTCAGTGAGAGATCAGCCATCCCAAAACCAAGTGCTTTTTGGCTGAAAAAGGACCTAGCTTTTGGCCCCGAACAACCATCCGTAGGCCAAAGACAGCGAGATTTTTTTAAAGGAAAGTTGACATTTTCTACAGCAAGATTGCGTTTAGCTGGAATCCTAATTTTTAATTGAGGAAAAAAAAAAAGAGAAACCCCAAATTCTTCCAGAAAATCTTCCACCAGCCAGGGTCTGCCATGTGAGCCCAGATTAG
Seq C2 exon
CAATACCATCCCACTGACATCACCGGCCAGCTCAACCTCTCCGACCCCTCCGTCAGCACTGTGGTGTGACCTCCTCCCCGAGGGCCATCAGTCCTTGCCCAACACAGCAGGAAGGCACAGCCAGGACTGCCTCTCAAGGGACACTGATGGGTTCTTCAGGGTGAGATGGGAGTAAAGCATCCTTCATCCATACACGGTGACTTCATTGTATATCTCCCTCCCTCCCTAGGCCTGCCGCCACACTCACGCCCCAAAATGCACGGCAGAACCAGGACAGGGTTTGGACTTCACTGTACAGAGATAACCGCTCCCAACCAGTGCTGTTGTTGATCAGTATTGCCACTGACTGGCTGCGTGCGAGGGGAAAGGACTTGGAAGGCACGTGGTGCCTGCTGTCCCACGGTGACAGGGAAGAGCCGGTGTCGGGCTGCAGCCACATGCTTGGCTTTGCGGGCTCTGGGTTCTCTCAGATCCCAGAGATGTTCTCGTGGAGCGGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008898_MULTIEX1-4/4=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.965 C2=NA
Domain overlap (PFAM):
C1:
PF0006021=Lig_chan=PD(3.4=18.4),PF105624=CaM_bdg_C0=WD(100=59.2)
A:
NO
C2:
NA
Main Skipping Isoform:
ENSGALT00000040369fB3430
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGCGGCCGTTAATGTGTG
R:
CACTGGTTGGGAGCGGTTATC
Band lengths:
357-1127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]