GgaINT0126093 @ galGal4
Intron Retention
Gene
ENSGALG00000008898 | GRIN1
Description
glutamate [Source:RefSeq peptide;Acc:NP_996862]
Coordinates
chr17:1005919-1009644:-
Coord C1 exon
chr17:1009534-1009644
Coord A exon
chr17:1007031-1009533
Coord C2 exon
chr17:1005919-1007030
Length
2503 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
3' ss Seq
AAATGGATTCTGCTCTGCAGCCC
3' ss Score
5.01
Exon sequences
Seq C1 exon
GATAGAAAAAGTGGTAGAGCAGAACCTGACCCTAAAAAGAAAGCCACTTTTAGGTCCATCACCTCCACCCTGGCCTCCAGCTTCAAGAGACGTAGGTCCTCCAAGGATACG
Seq A exon
GTAAGAGGAAGAAGAACAATTCTGCCCTCTCTCTTTCTCTCTCTTTCTCTCTTCTGCCATCCCATCGACTGCCACACACTCATCCCGAAGCTGCCAGTGTACATGCATAGCTCATGTTCGTCACCAGTCAGTCAGTCAGTGAGTCAGTCAGTCATCCCGTGTTCCTTGAGGATGCTGGGATCCTGGAGGGCAGGCAGGAGGTGCTTTGGAGTCCTGTGATGAGTTGGGAGATGCAACCGAGTTTTCGTTTCGTTTCCGTTTTCTTTTTGCCTGGATGATTTCTGATGTTCCTCTCTGTGCTTTGCTCACCGTACCGGTGCTGACCTCTTGAAACCGATGACATTTTATTTATTTATTTATTTTCTGTTCCTGAGTGTTCCTGTACCTGTTTGTCATTGTATGCCTAAAAACAATATCACCCCAATTTAATTTGGGCACCGTGTCACCTCACCGAGAGCCATGCGTGTCGCATTCTCTACATGTGATTTTTGTTTGTGACTATTAGCATTCGGGGCGTAGCACTCGGCGCAGTGACAGCTCTCTCTGGTTATCGGCAGCAGCATCCAAGTCGCTCTAGCAAAGAGGAGGCACGGGAGGTCGTTACAGACCCAGCCTGCTTCAAACTCGGGCTTTCCACCTCGCAGTGCCGCTGCTCGCACGTAACCAGAGAACGTTTCCAAATAGCTGCCTCTAAAGCCAGCCGTTCCCCACTGTGCAAACGTGTCTGCTCGTGCTGGAGCTTCAGGCACGCCAGCGTCAGGTTGGGCTGTTGGTCTGTCGGACTGAGCCGGTGTCCCTCTGCATGTTGCCGTCTGTCATACAACACTCTGCACTGTGGCTACTCTGTTGTCTTGTGTGGACGCGGGTGCTGCCCGAAATCTGCTCCCCGGGCCGCTCGGCTGCTGCTAGCGGGGTCCCCGCGGTGCACGGCGGGGATGGGGGGACGGCAGCAGGCTGGAGGGAGGGAGCGGCATGCCATGTCGCAGGGGTCTCTGGCCACGGTGCTGCATGGAAGCGGCTGCGTTTGGCACCAGGGCAGGCTCTGACCCCAGCACCCTGGGAAATGGCCTCAGGGACAGCCGAGCCCCCTTCCAGGCTCAGCTGCCACCGTCTCGCACAAAGCACTCCTTGGGGAACTCGTGCTCTCTTTGCTCTCCTTGCTTGTCCCCATATCCAACGGGGAAGACGAGCATCCCTGTCACCTCCTTCACTTACCACGCTCCTGGAGTGGATCCTTGTCCTGGTGGTACCCCAGCATCTCAGTGCCCCCAAAACAGATCCATGTGTATCCTCAGGCTGAGGATGGTTGGAGGAGGCTCTGGGTGGCTGGACCCTGACCAGGGGCAGGAGGCAGAGATGGGGCGGACGATGCAGTGAGGAGAAGGTGGGAAGTGAGAAGAGCCAAGAGAAGGGACAGTTGGGGGGTAAAACCTGCAGGGAAGCCCTTGGGGTATCTGGAGCAAACCCCATGTTTTGTTGTCTCCATGGTTTAGAAAGCCAAGGGTCCTGGCCTGGGACAGCCAGGCCAGCAAATGTCACAGCAAACTGGGAGCCTGGGGAGACCCATGTCCACTGCAGGCATGTGGCCTGGAGATGTGATCCCTTGCCCTGGCTATGGTTGTGCCCTTCCCCAAGTGCCAGGGGCTGGTGCCTGCCCGTTCCCCCAGGATCAATGGGGCACTCCAGCATCTCCTCCATTGCCCCACTTCCTACCCAGTGACCCTGGGCCTGATCCTGCTCATGGTGCAGCATTCACAGCCCCATGCCACCCCACCACCCGGTGGTAGGAGCACCCTACCTAGGAGCTTCCCAGGGCCTGGGGTCTCTACACCAGAGGCTCCAGATGATGGCTGCCACTCTGATGACAGATGCAGCTGTGGGGCAGCTATAGGCAATGAGGCCCTGCTGTCTTCAAGCCTATTAAAGCCATCTGCACACCATGGCGTGCCATGGCAAGGGCCCAAGACATGTTCCCAAGGGGGTCAGGCTAGTTGGGCCACCAAGTGGTCAACAGGACCAAGATCTGAACCAAGAAGCTCCAAGGCTGAGGCTAGCAGGCCCAAGGCAGGAAGCAGCAGAGCAAGCTTTGTAGCGATGTCGGGCAGGCCCACTGGTGTGCTCCATTGGGCGAGCAAGCAGTGGGAGGGTGCTGTCACCAGCTCGTGTCACAGCCTGCCACCTGGTGCCCCCAGCTTCCACTCAGCAGCCCTGGCTCAGAGACCCCAAAGCCCTCCTGCTGTGGAAGGCCCCATGAGGTCGTAGCATGCGGGGTCACGTTGCCTGGGGTCCTTGTAAAGATGAGAAAGCAGTGAGGTGCTCTACGATGACGCTTGGCAGGGCCGTGGGCCCACACCAGGTCTCAGCTGGGCAAAGCCAGAGAGCCCATGGGGCTGGAAGGCCAGGCTGACCCCGGCCCCATGGGCTCTCCTGGCTAGCAAACCTGGTGGCCTTGTTTCTTCCCTTTTCGTTGTCGGGAGTTTTAAAAATGGATTCTGCTCTGCAG
Seq C2 exon
CCCTGCAGAATGGTCCCTCAGGAGTGCCAGAGAGACAGGCTGGCACCATGGAGCCAAGACAGCCCCGGGAAGCTGCCACCCCACTCTGAACGTCCTAGCGCCCACCATCACCCGAGCTGCACAGCCTCTCCGCGGCACATCATCCCCACCGCCCCAGGAGGAGATGCATGTGTTCCCCATAGGCAGCTCCTGCAACTCGAATAGCACTCGCAGAGCTGACGTACTGCCATCCATCGCAGCCACCCACGCTACCGCAACCCCACAGAAGCCATGTGAGACGCATAAACCACACAGACACCTTCCGAGCCGGCACATTTCGTACAGACACGTACCGAGACGCACAGATCCCTTAGCCCACACTGCAGACGTCATCAGCCCCCACAGCCCCACTGCCAGCCCGCGGGCCCCCAGGCACAGCACAGCACACGTCCCACGCCACCGCCAAGCGAGGGCCCCGCGAGCGTGGGGACGATGCCAGAACTGGTCGAGGATGGAGGGGGTGCATGGAAAAGGTCACCTTTTCAGTGAGAGATCAGCCATCCCAAAACCAAGTGCTTTTTGGCTGAAAAAGGACCTAGCTTTTGGCCCCGAACAACCATCCGTAGGCCAAAGACAGCGAGATTTTTTTAAAGGAAAGTTGACATTTTCTACAGCAAGATTGCGTTTAGCTGGAATCCTAATTTTTAATTGAGGAAAAAAAAAAAGAGAAACCCCAAATTCTTCCAGAAAATCTTCCACCAGCCAGGGTCTGCCATGTGAGCCCAGATTAGGTTGAAGTCATTTTTAAAGACATGCTGATTTCTTGTCTATATTTTCTTCCTGATGTCATTTAAAGTTTTTGGTGCCTTCACTTCACTTCCATACCTTAACATGTTTGAGTCTCTTCTGCAGTTAATATTAATTAATTTCTTGGCTTTATAATGTTTGGTTTGGGGATAATTGCACCATCCCTGTAACATCATTTACCCTAAATTACTGATATGTGCTTCTAGCATTAGTTCTACTTTAACATAGTTTTGATATGACAATTTTCTTGCTTTTTTTTCTTTTGCCTTTTCCTTTTTCTTTTTTTTTTCTTTTTTAATATTAAAAACTGCATGCGTGAACTCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008898:ENSGALT00000040369:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.784 A=NA C2=0.965
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]