BtaINT0069131 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047202 | GRIN1
Description
glutamate receptor, ionotropic, N-methyl D-aspartate 1 [Source:HGNC Symbol;Acc:HGNC:4584]
Coordinates
chr11:105922299-105925870:-
Coord C1 exon
chr11:105925760-105925870
Coord A exon
chr11:105922537-105925759
Coord C2 exon
chr11:105922299-105922536
Length
3223 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
3' ss Seq
TCTGTATTTCTATTTTGCAGCAG
3' ss Score
8.56
Exon sequences
Seq C1 exon
GATAGAAAGAGTGGTAGAGCAGAACCCGACCCTAAAAAGAAAGCCACATTTAGGGCTATCACCTCCACCCTGGCTTCCAGCTTCAAGAGACGTAGGTCCTCCAAAGACACG
Seq A exon
GTAAGGGGAAGAGCGCCCAGTCCCACGTGTCCGACTCTCCCCTCGCCCCCGTGTCTGTGTCCCGTGCATCAGGCCCGCCCTCGCCATCCCACCACCCGCCTCCGCCCGCGCGGCCCTTCTGCGCTCACCGCTGCCCACCCGGCACACTAGGGCCTCTCTGACTCTGGGCCCCTCTCTCGGCCCTCTGCCGCGGGCCTGCCCACCGGGTCGTCTTCCCCGTGTGTCTCTGCGTTAGTCTGCCCCCCGTGCCATGACGCCACGCGCCATCTTAAAGCCGTGTCATGTCGTTGGTCAGCTGGTCAGCCTCCCCACTCGGGGCTGTGCCCGCAGCCCCGGGCGCCCAGGGCCACCCCGTCCCGGGCTCCTCAGCCGTCAGGAGGCCACACCACCTCTCTGTCGCGTCTGTTCCTCCAGCTTCTCCCAGGGAGAGGCCCACTGCCCTCGCTCCCTCCCTGCGACGTCCGTGGAGGGGTGCCTGTGATGTCCCATCCGTCCATCTGTCTGGCCGCCAGCCCCGCCACCCAGACACCTGTCTCTCGTGTCTCACCAGAGCCATGCCTGTTGCATCCCCTCCATGTGGTCTCTGTGTGGGCCGGGGCTGGGGGGCCGGGCCCGGCTCCACCTGGGTGGACGGCTGGGGCCTGGAGTTGGCACAGGCCCCTGGCCACAGGGGCCGTCGGATGGGGAACGGGTGGGACCAGAGGTGGCGGCTCCCACCCCCGGCCGAGCAGGGGCCCTGCGGGAGGTGTGCGGGCAGCACCCGGGGGTCTGAGAACAGGGCAGGGGGGGGGCCCGAAAGCTGTGGCTGGCAAGCCTTGGGCACCGAGGCTCAGGGAGGGGAGACCCCCATGGAGGGGAGCGGTGCTTCAGCACCTGACCCCCAGCCCCTTCCGAGCCTGAGCCAAGGGTTCCCTGTCCTCCTGCCTGGGCAGCCCGTCACTGTCCCGGGTGTGTGTGCTTGAACCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTGCGTTAGTCTGCCCCCCGTGCCATGACGCCACGCGCCATCTTAAAGCCGTGTCATGTCGTTGGTCAGCTGGTCAGCCTCCCCACTCGGGGCTGTGCCCGCAGCCCCGGGCGCCCAGGGCCACCCCGTCCCGGGCTCCTCAGCCGTCAGGAGGCCACACCACCTCTCTGTCGCGTCTGTTCCTCCAGCTTCTCCCAGGGAGAGGCCCACTGCCCTCGCTCCCTCCCTGCGACGTCCGTGGAGGGGTGCCTGTGATGTCCCATCCGTCCATCTGTCTGGCCGCCAGCCCCGCCACCCAGACACCTGTCTCTCGTGTCTCACCAGAGCCATGCCTGTTGCATCCCCTCCATGTGGTCTCTGTGTGGGCCGGGGCTGGGGGGCCGGGCCCGGCTCCACCTGGGTGGACGGCTGGGGCCTGGAGTTGGCACAGGCCCCTGGCCACAGGGGCCGTCGGATGGGGAACGGGTGGGACCAGAGGTGGCGGCTCCCACCCCCGGCCGAGCAGGGGCCCTGCGGGAGGTGTGCGGGCAGCACCCGGGGGTCTGAGAACAGGGCAGGGGGGGGGCCCGAAAGCTGTGGCTGGCAAGCCTTGGGCACCGAGGCTCAGGGAGGGGAGACCCCCATGGAGGGGAGCGGTGCTTCAGCACCTGACCCCCAGCCCCTTCCGAGCCTGAGCCAAGGGTTCCCTGTCCTCCTGCCTGGGCAGCCCGTCACTGTCCCGGGTGTGTGTGCTTGAACCCCAGGCCTCCAAGACTGGCCTAGCCCTGCTGGGAGCGTCCCCAGGCGAGGAGGGCCCGCCCAGGGCCAGCACAGCCCTCAGCCCAGCAGCCTCCCCGCGGTTCGGAGGCGGCTTGTCCTCCCGTCCACAGGAGCCCCAGTTCACAGGCAGTACTACCCCACAGTCTTACGGTCCAGGCGGGAGCAGGATTTATAGGCCCTGCCCACAGCACAAGGGAAGAGGGGCAGACACAGGACAGACAGGGCGCGGCACAGAGCCATCCGAGTCTGGGGTGAGGCCGCCACCTGCCCCAAAGGGGCCCCTGAGGCCTGGCTACTCCACTCCTAGGGCTCAGCACAGGCAGAGTGGGTGGACAGGGGTGGCCTGAGGGGCTGAGAGCACAGGCCTGGCGCCGTGCAGCCTGGGAACTGGGTGGGGCCTGAGCCAGGGGCCCCACCGGGGGCTGGGAGGGCCAGAGAGGAGCAGCAGTGGGGCAGCCAGGGAGGAGGTGCCCAGCAGACAGAGCTGTGGGGACAGGCAGGCGAAAGGAGGGTCAGGGGAGTCACGGCGAAAGGAGGGTCAGGGGAGTCACGTAGGCAGGGGGCCACTTTCCGAGGGCAGCAGAATCCCATCCCCGTCCCGGCCCGGAGCCCACTCACAAGCCCTTAGCTGGCCTGGGTGCAGCTCAGAGACCCTCAGGGTGCCTGTCCCGGGACACGCTCCCAGCAGACTCCTTGCCCCGAGCCTCCCTGGGGACCACCCTCCAGGCCAGCTCTGGTGCCACGTGGCATCTGGGGCTGGCCGGCCCTGCAGGGGTGACTGGGGACACTGCCAGCTGGGGGCTGGGCGGGGGAGGGCAGCCCAGCCCCCCACCGTTTCAGGCTGGGCACCTGCTCGGAGGGAGGCCTGGGTGGGGGGCTCTGTCGGGAGGGGTGGGGTCAGTCCGGCTGCTGAGATGCGCTGCCCCTGTCCCGTGGCTGGTCTGGGCCAGGGCGGCACTGGGCGCTCAGGGCTGGGGTCCCTGGCAGCCGGCGGGGCCAGCGGGTATTGATTGTTGGTTCTTATTTATAGAGCACCGGGGGTGGACGCGGCGCTTTGCAAAACCAAAAAGACACAGTGCTGCCGCGACGCGCTATTGAGAGGGAGGAGGGCCAGCTGCAGATGTGTGCCCGGCATAGGGAGAGCTGAGACGCCCTGCCCGCCCTCCTCTGCCCCCCTCCCCCGCAGACAGACAGACAGACGGACGGGACAGCGGCCCGGCCCACGCAGAGTCCCGGAGCACGACGGGGTCAGGGGGAGGAGCGCCCCCCAGCCTCCCCCAGGCCGCGCCCGCCTGCCCGCCGGTCGGCCGGCTGGCCGGTCCACCCGTCCCGGCCCCGCGTGTGCCCCTGATGGCCGGGCTAACGGGCGCCTTGTCTGTATTTCTATTTTGCAG
Seq C2 exon
CAGTACCATCCCACTGATATCACGGGCCCGCTCAACCTCTCAGATCCCTCGGTCAGCACCGTGGTGTGAGGCGCCCGGAGGCGCCCACCCGCCCCGTTAGCCCGGCCAAGGACACTGAGGGGTCCTGCTGCTCGGGAAGGCTTGAGGGAAGCCCACCTGCCAGAGACTGCCCACCCCGGGCCTCCCGTCCGTCCGTCCACCCTGCTGCCGGTGGGCAGCCCCTGCTGGACTGAGGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047202:ENSBTAT00000065439:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.635 A=NA C2=0.364
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development