RnoINT0067645 @ rn6
Intron Retention
Gene
ENSRNOG00000011726 | Grin1
Description
glutamate ionotropic receptor NMDA type subunit 1 [Source:RGD Symbol;Acc:2736]
Coordinates
chr3:2506896-2511023:-
Coord C1 exon
chr3:2510913-2511023
Coord A exon
chr3:2508645-2510912
Coord C2 exon
chr3:2506896-2508644
Length
2268 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
3' ss Seq
TGTGTATTTCTATTTTACAGCAG
3' ss Score
8.57
Exon sequences
Seq C1 exon
GATAGAAAGAGTGGTAGAGCAGAGCCCGACCCTAAAAAGAAAGCCACATTTAGGGCTATCACCTCCACCCTGGCCTCCAGCTTCAAGAGACGTAGGTCCTCCAAAGACACG
Seq A exon
GTAAGGGGAAGAGCACCCCAGTCCCGCGTCTCTGACTCCTCCCTTGCCCCGTGTCTGTCTCCCTCTCCCTTACCATCCCACCTCTGCCCCATCTTCAACCCTGGCCATCTGTGCCAAGTCCTTCACTCACCCTCCACCCATTAAAGGGTGCTGTCCTTTAGAACGCTCCAGACCTCTCCTCAAACCCTCGCTGGTCCTCAGCTTCCCCATGTGTCTCCACGTTAGTCTGCCCACCTCTCTCCCCATGCCATGACCCACACACCATCTGGAAGCTGTGTCATGTTGTTGGTCAGTCAGTCAGCCTCACTGCCTCTTTGGGCTACCCGGACCCTGGGAACCAGAGTAGCCCTATCCCAGGTTGCCCCTGCCAGGAGGCCACACCACGTCTGTTTCATCCCTGTTTCTCTTGCCTCTACACGGGGCTTGATGCCTTCGTTCTTGCCCTGCAACAGCCCTGCAGGGCATAGCTGTGATGTCCCATTCCGTCCGTCTGTCTGGCCACTGGCCCCGCCCCCCAGACACCTGTCTCACCTGTCTCACCAGAGCCATGCGTGTTGCATCTTCCATGTGGTCTCTGTGTGGGCCGGGGGCTGGGGGCCGGGCCTGGGTCCATCTGGGTGGACGACTGGGGCCCAGCATTGGCACTGACCCTTGGTCACAGGGAGACTGCCAGGTGGGGAGTGGGGTGTTGCCGTGTTGAACAGGTCCCCGATGGAGGTATGGCAGCAGCGAGTGCCCAGGTGATCTGAACATGGATAGGGTATCCTTGAAAGTACTGGGGCCTGAATACCTAAGCAAAACAGGTTCTCAGAAGGAGGCCCAGGAGGGGGAGGCTAAGACCAGTGCTTCAGCTCAAACCCCCAAGCACTGCCGCAGGCCACTGTCAGAGTCAGACCTCCTGCCTTCAGAGTCAGAACCCTGTTCCCGGCCTTGGGCAGTACATCATCGCACCAGGAATACACACTCAGAAGAAAGCTTCCAACAGACTCCCCTTTTGCTAGAGTCACGCTGGTCTTACTGAGTTATCCTCTAGCCCACAGGAAGCCCTCTTACCAGTGGGGAGTGTCACCCACAAGGGGCTGGTGTCCCACAAGAAATCTGATTTTGTAGTTAGACTCCTATGCCCAGGAAGAAAGACATACAGACAGGATTTGGCATGAAGCAAAATGCCAAGTTAAAAGTACTAGAGACCCACAAGGACCTTAAGTCAGAAAGAGTGGATGAGGAGTAAGGATCTATGGTTTGCACCAACTTGAGGCTCCAGGAGCTGGTGCTGACACTATCTGTAGGGTCACCCAGACCAGGGAAAGTGGACAAGGTCTATGCTACAAGGTCTGAGCCAGAATCCCCATAAGGAGGCACAAGGGAGGGAGAGCAGGGCCAAGGGAGCTGTGGGCTGGAATTTGTATGGGAAGGGGAAATCTGACAGAGAAGATGATCTGTACTTGGGGGGGCCAGGTGGCCAAAGTGGGGCAAGTGGGTGGCAGGCCATTTTCAGTGGGTGTCGCTAAGTCTTGAGGCCCCATCTGGAGCTGGCCAGGTACAACTCAGAGATCTACATGGTTCCTTTCTGGGGACTTGCTCTCAGTTCAATCTTTACCTGAGCCTCCCTGGGCACCAGGGACCCGTTCTTCCGGGCCATCTGGAGCTGGCCCCACCCTGCAGGGTTGACCTCTGGGGGCCTGGGTGGGGGAGGACAGCCCAGCTCCCACCCTGTCTCTGGGCCTGGGTGCTGTTCAGAGGGAGGACGGGGTGGGGGCTCCTTTGGGTGGGGTGGGGTCGGTCCAGCTGCTGAGATCCTCTGCCCCTGTCCTGTGGCCGGTCCGGGCCAGGGCAGCACTGGGCGCTCAGGGCTGGGATCCCTGGTGGCCGGCGGGGCCAGCAGGTATTGATTGTTGGTTCTTATTTATAGAGCACCGGGGGTGGACGCGGCGCTTTGCAAAACCAAAAAGACACAGTGCTGCCGCGACGCGCTATTGAGAGGGAGGAGGGCCAGCTGCAGCTGTGTTCCCGTCATAGGGAGAGCTGAGACGCCCCGCCCGCCCTCCTCTGCCCCTCCCCCGCAGACAGACGCACGGGACAGCGGCCTGGCCCACGCAGAGCCCCGGAGCACGACGGGGTCGGGGGAGGAGCACTCCCAGCCTCCCCCAGGCCGTGCCCGCCTGCCCACCGGTCGGCCGGCTGGCCGGTCCACCCTGTCCCGGCCCCGCGCGTGCCCCCGACGTCGGAGCTAACGGGCCGCCTTGTCTGTGTATTTCTATTTTACAG
Seq C2 exon
CAGTACCATCCCACTGATATCACGGGCCCGCTCAACCTCTCAGATCCCTCGGTCAGCACCGTGGTGTGAGGCCCCCCGGAGGCGCCCACCTGCCCAGTTAGCCCGGCCAAGGACACTGATGAGTCCTGCTGCTCGGGAAGGCCTGAGGGAAGCCCACCCGCCCCAGAGACTGCCCACCCTGGGCCTCCCGTCCGCCTGCTCTGCTGCCTGGCGGGCAGCCCCTGCAGGACCAAGGTGCGGACCAGAGCGGCTGAGGATGGGCCAGAGCTGAGCCGGCTGGGCAGGGCCACAGGGCGCTCCGGCAGAGGCAGGGCCCTGAGGTCTCTGAGCAGTGGGGTGAGGGGCCTAAGTGGCCCCGGTCGGAGGAGTCTGGAGCAGAAATGGCAGCCCCATCCTTCCTCCAGCCACTACCCCAAGCTACAGTGGGGGCCTATGGCCCCAGCTTGCTAGGTCACCCCCGACCCTTCCTCCAGCGCCTGCTCTCTGCAACTTGATTTCCACCTCTCTCCTGCTGCACCACCCTCCCACGACATTTCCCCACCCCATTCACTGGGTTGTCTCTGACCTTTCCCAGGGCTAGCCTTCACTGCCCTAGTGGCAGTGCTTCAGGGGTGCTTTCTGGCTCCCAGACATCTAGGGCTCCAGACTCCAAGAGGGCTGAGCCTTCTCTTCTGTCCGCAGCCACAATAGGCTTCCTCAGACGCTGGCTCGTGATGAGTCCCGCACCTTGGGCACCAGGGAGCGCCATCTGCCTCCCAGTCCGGTGTCACTCACCCCACTACCTTGTACATGACCAGCTCTCCCAGTGTCCCAGTGTCTGCCCCAGGGACACCGGGCGCGCACAGCCACCCCTAATCCCGGTATTCAGTGGTGATGCCTAAAGGAATGTCAGAAAATTTCCGGGTTTTGTCTATTGTTGACGCCTACAGGGAATGTGAAGGGAGGATCGGGGATTTGGGGACAGTTTTCAAAGTGCGGGATGCTACAGGAGCGCTAGAAACAACAGCGGAACCCTTAGGCTTGGATAGCTGTTGTTGTAGGGCTCCCAACATCCTCCAGGGAGGCTGGGCCCTCGGGGTCTGGCTGTCTCCTTATTAAGTGGCGCACTGTGGTGCGGCGGCGGCGGCGCCGTGCACCACAAGCAGTGAGTACCGAGCCCAATGCCAGGCAGATGGCTAAACTGGCAAGGAAAGAGGCCGGCCCGAGAGCATAGACCACCGCCAGGTCTCGCGCAGCGAGTGACTGCGTGCACTGTTTGAAGGCGTTGTCCGGAAAGTCTGTCAGTAGGTTGAGCGTTTGAAGTTTTGGAGACACACAGAGCAGGGTCTCAGTTTCTGCGGGACACAGGAGCGGCGTCAGATGGCAGCAGTGGCAACAAACATCATCCGCCCTGTGCCCCAGATGGCTCACCTGAAGTGGGACGCGGGTGCTTACGCAGCCAGGTGCAAAGCGGGCGCAGCGCGCAGCTGCACGCCCAGGGGTTGCCATGCAAGCGCAACACGTCGAGGGCAGGCAAGCTATTCAGCAAACCCGCCTCGAGTGCCGATAGTGAATTGTCCTGCAGGCTGAGCACCCGCAGTAAAGGGAGCGGGCCCAGGATCGAGGGCTCCAGGAGTGCCAGCCGGTTACCCGCTAGGGAGAGGAAACTCAGCGCTCGCAGAGGCGTGAAGGTGCCAGGAGACAGAGTTTCCAGCTGGTTGGAGCTCAGGTCCAGCCGTTGCAACACTCCCAGACCCCAGAAAGCTCGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011726:ENSRNOT00000037725:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.635 A=NA C2=0.364
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]