BtaEX0016341 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047202 | GRIN1
Description
glutamate receptor, ionotropic, N-methyl D-aspartate 1 [Source:HGNC Symbol;Acc:HGNC:4584]
Coordinates
chr11:105922299-105925870:-
Coord C1 exon
chr11:105925760-105925870
Coord A exon
chr11:105922684-105922900
Coord C2 exon
chr11:105922299-105922536
Length
217 bp
Sequences
Splice sites
3' ss Seq
TTGTTGGTTCTTATTTATAGAGC
3' ss Score
6.94
5' ss Seq
GGGGTCAGG
5' ss Score
0.43
Exon sequences
Seq C1 exon
GATAGAAAGAGTGGTAGAGCAGAACCCGACCCTAAAAAGAAAGCCACATTTAGGGCTATCACCTCCACCCTGGCTTCCAGCTTCAAGAGACGTAGGTCCTCCAAAGACACG
Seq A exon
AGCACCGGGGGTGGACGCGGCGCTTTGCAAAACCAAAAAGACACAGTGCTGCCGCGACGCGCTATTGAGAGGGAGGAGGGCCAGCTGCAGATGTGTGCCCGGCATAGGGAGAGCTGAGACGCCCTGCCCGCCCTCCTCTGCCCCCCTCCCCCGCAGACAGACAGACAGACGGACGGGACAGCGGCCCGGCCCACGCAGAGTCCCGGAGCACGACGGG
Seq C2 exon
CAGTACCATCCCACTGATATCACGGGCCCGCTCAACCTCTCAGATCCCTCGGTCAGCACCGTGGTGTGAGGCGCCCGGAGGCGCCCACCCGCCCCGTTAGCCCGGCCAAGGACACTGAGGGGTCCTGCTGCTCGGGAAGGCTTGAGGGAAGCCCACCTGCCAGAGACTGCCCACCCCGGGCCTCCCGTCCGTCCGTCCACCCTGCTGCCGGTGGGCAGCCCCTGCTGGACTGAGGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047202-'25-23,'25-22,26-23
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.635 A=0.947 C2=0.364
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000065439fB3127
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATCACCTCCACCCTGGCTTC
R:
AGCCTCAGTCCAGCAGGG
Band lengths:
292-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development