GgaEX0027577 @ galGal4
Exon Skipping
Gene
ENSGALG00000008898 | GRIN1
Description
glutamate [Source:RefSeq peptide;Acc:NP_996862]
Coordinates
chr17:1002685-1012389:-
Coord C1 exon
chr17:1012244-1012389
Coord A exon
chr17:1010856-1010897
Coord C2 exon
chr17:1002685-1004048
Length
42 bp
Sequences
Splice sites
3' ss Seq
ATTGTAAGACTTTTCCACAGGAG
3' ss Score
3.48
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTGTGTTTATGCTGGTGGCTGGAGGTATTGTTGCCGGGATATTTTTAATATTCATAGAAATAGCTTACAAAAGGCATAAGGACGCGCGGAGGAAGCAGATGCAGCTGGCGTTTGCGGCCGTTAATGTGTGGAGGAAAAACCTGCAG
Seq A exon
GAGGAAACGTCAGAGCACTAGTATCTGGTACATTGCTAGAAG
Seq C2 exon
CAATACCATCCCACTGACATCACCGGCCAGCTCAACCTCTCCGACCCCTCCGTCAGCACTGTGGTGTGACCTCCTCCCCGAGGGCCATCAGTCCTTGCCCAACACAGCAGGAAGGCACAGCCAGGACTGCCTCTCAAGGGACACTGATGGGTTCTTCAGGGTGAGATGGGAGTAAAGCATCCTTCATCCATACACGGTGACTTCATTGTATATCTCCCTCCCTCCCTAGGCCTGCCGCCACACTCACGCCCCAAAATGCACGGCAGAACCAGGACAGGGTTTGGACTTCACTGTACAGAGATAACCGCTCCCAACCAGTGCTGTTGTTGATCAGTATTGCCACTGACTGGCTGCGTGCGAGGGGAAAGGACTTGGAAGGCACGTGGTGCCTGCTGTCCCACGGTGACAGGGAAGAGCCGGTGTCGGGCTGCAGCCACATGCTTGGCTTTGCGGGCTCTGGGTTCTCTCAGATCCCAGAGATGTTCTCGTGGAGCGGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008898_MULTIEX1-1/4=C1-C2
Average complexity
ME(1-2[100=100])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.010 A=0.500 C2=NA
Domain overlap (PFAM):
C1:
PF0006021=Lig_chan=PD(3.4=18.4),PF105624=CaM_bdg_C0=WD(100=59.2)
A:
NO
C2:
NA
Main Inclusion Isoform:
ENSGALT00000040369fB3430
Main Skipping Isoform:
ENSGALT00000040369fB1473
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGCGGCCGTTAATGTGTG
R:
TGTGTTGGGCAAGGACTGATG
Band lengths:
143-185
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]