GgaEX0013058 @ galGal3
Exon Skipping
Gene
ENSGALG00000008920 | NDOR1
Description
NA
Coordinates
chr17:1348374-1350493:+
Coord C1 exon
chr17:1348374-1348495
Coord A exon
chr17:1349214-1349583
Coord C2 exon
chr17:1350273-1350493
Length
370 bp
Sequences
Splice sites
3' ss Seq
CAGTCTTTTTGCCCACACAGGGA
3' ss Score
7.16
5' ss Seq
CATGTGAGC
5' ss Score
5.03
Exon sequences
Seq C1 exon
GTTCAGCGCTGGAGACGTGGTGATGATCCAGCCCCAGAATTGCCCTGAAGATGTGCAGCAGTTCTGCCAGCTCCTTCGACTGGATCCAGATAAATGCTTTTTGCTGAAGCCCACAGAGCCTG
Seq A exon
GGAGAGCACATGAATCCCTTGATATCCTCCTCTGCAGCCTGCTTGGTGTGGTCAGCAGCAGGAAGGGAGAAGTCCTGGACCTTACAAAGGATGCAGAGCAATTGCCAGCCCCTCTGCTTGATGCCACCTGAAGCTAGACAGTGCTGTGAGGACCCTCTAACGGGCTTCTGTGGCCTAGGAAGTGTCCAAGCTACCATGCCAGGGAACAGGTGCTCTGTCTCCAAGATGCCAGAGCTCCATCCCTGCTATCTCTGAGCACTCTTGATCCTGATATGTCCCAGCGTTGGGCCCTGGCATTTCAGTCCACCTGCGGGGATCTGCCTCTTGTGAAGAATCACAGATCCTGGTTGGTGCACCTGCAGATCGGCAT
Seq C2 exon
GCACAGCCCTCCCTGCCCACTTGCTGCAGCCCTGCACCATCCGGCACCTGGTCACCCACTACCTGGACATCTCCTGCGTGCCACGGCGCTCCTTCTTTGAGCTCTTGTCCCACTTCTCTACGAACGAGCTGGAGCGGGAGAAGCTGCAGGAGTTCAGCTCTGCACAGGGCCAGGAAGAGCTGTACAGCTACTGCAACCGGCCTCGCAGGACCACCCTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008920-'6-8,'6-7,8-8
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.014
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=FE(18.7=100)
A:
PF0066715=FAD_binding_1=PD(20.8=47.7)
C2:
PF0066715=FAD_binding_1=FE(33.3=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAGCGCTGGAGACGTG
R:
GAGGCCGGTTGCAGTAGC
Band lengths:
326-696
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]