GgaEX0013057 @ galGal3
Exon Skipping
Gene
ENSGALG00000008920 | NDOR1
Description
NA
Coordinates
chr17:1348374-1350978:+
Coord C1 exon
chr17:1348374-1348495
Coord A exon
chr17:1350273-1350493
Coord C2 exon
chr17:1350871-1350978
Length
221 bp
Sequences
Splice sites
3' ss Seq
CTCCGGTGCCTCTCTTGCAGGCA
3' ss Score
10.2
5' ss Seq
GAGGTTGGC
5' ss Score
3.55
Exon sequences
Seq C1 exon
GTTCAGCGCTGGAGACGTGGTGATGATCCAGCCCCAGAATTGCCCTGAAGATGTGCAGCAGTTCTGCCAGCTCCTTCGACTGGATCCAGATAAATGCTTTTTGCTGAAGCCCACAGAGCCTG
Seq A exon
GCACAGCCCTCCCTGCCCACTTGCTGCAGCCCTGCACCATCCGGCACCTGGTCACCCACTACCTGGACATCTCCTGCGTGCCACGGCGCTCCTTCTTTGAGCTCTTGTCCCACTTCTCTACGAACGAGCTGGAGCGGGAGAAGCTGCAGGAGTTCAGCTCTGCACAGGGCCAGGAAGAGCTGTACAGCTACTGCAACCGGCCTCGCAGGACCACCCTTGAG
Seq C2 exon
GCCCTCTGGGATTTCCCTCACACCACATCTGCCATTCCACCTGAATACCTGCTGGACCTCATCCCTCGCATCAGACCCCGCGCCTTCTCTATTGCCTCCTCCATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008920_MULTIEX1-7/12=6-8
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=FE(18.7=100)
A:
PF0066715=FAD_binding_1=FE(33.3=100)
C2:
PF0066715=FAD_binding_1=FE(16.0=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAGCGCTGGAGACGTG
R:
AGCATGGAGGAGGCAATAGAGA
Band lengths:
229-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]