RnoEX0058784 @ rn6
Exon Skipping
Gene
ENSRNOG00000010616 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:RGD Symbol;Acc:1308479]
Coordinates
chr3:2468325-2468935:-
Coord C1 exon
chr3:2468814-2468935
Coord A exon
chr3:2468517-2468737
Coord C2 exon
chr3:2468325-2468432
Length
221 bp
Sequences
Splice sites
3' ss Seq
CCTCCATGCCATTCCTGCAGGTG
3' ss Score
10.85
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
TTTTGCTGCTGGCGATGTTGTCTTAATTCTGCCCTCTAACTCGGAGGCCCACACCAAGCAGTTCTGCCAACTGTTGTGCCTGGACCCCAATCAGTTTTTCACACTTAAGCCACGGGAACCAG
Seq A exon
GTGTCCCTTACCCACCAGGGCTGCCTCAGCACTGCACTGTGTGGCACCTTGTGTCGCAGTACTTGGACATTGCCAGCGTGCCCCGCCGTTCCTTCTTTGAGCTCTTGGCTTGTCTCTCCCCACATGCACTGGAGCGGGAGAAGCTGCTGGAATTCAGCTCCGCCAGAGGACAGGAAGAGCTCTGGGAGTACTGTAATCGGCCCCGCAGAACCATCTTGGAG
Seq C2 exon
GTGCTGTGTGACTTCCCACACACGGCGGGTGCCATTCCTCCAGACTACCTTTTGGACTTGATCCCTCGGATCCGTCCCCGGGCCTTCTCCATTGCTTCATCCCTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010616-'7-15,'7-11,8-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=FE(18.6=100)
A:
PF0066715=FAD_binding_1=FE(33.0=100)
C2:
PF0066715=FAD_binding_1=FE(15.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGCTGCTGGCGATGTTGT
R:
GTAGGGATGAAGCAATGGAGAAGG
Band lengths:
228-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]