GgaEX0013057 @ galGal4
Exon Skipping
Gene
ENSGALG00000008920 | NDOR1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:HGNC Symbol;Acc:HGNC:29838]
Coordinates
chr17:956672-959276:+
Coord C1 exon
chr17:956672-956793
Coord A exon
chr17:958571-958791
Coord C2 exon
chr17:959169-959276
Length
221 bp
Sequences
Splice sites
3' ss Seq
CTCCGGTGCCTCTCTTGCAGGCA
3' ss Score
10.2
5' ss Seq
GAGGTTGGC
5' ss Score
3.55
Exon sequences
Seq C1 exon
GTTCAGCGCTGGAGACGTGGTGATGATCCAGCCCCAGAATTGCCCTGAAGATGTGCAGCAGTTCTGCCAGCTCCTTCGACTGGATCCAGATAAATGCTTTTTGCTGAAGCCCACAGAGCCTG
Seq A exon
GCACAGCCCTCCCTGCCCACTTGCTGCAGCCCTGCACCATCCGGCACCTGGTCACCCACTACCTGGACATCTCCTGCGTGCCACGGCGCTCCTTCTTTGAGCTCTTGTCCCACTTCTCTACGAACGAGCTGGAGCGGGAGAAGCTGCAGGAGTTCAGCTCTGCACAGGGCCAGGAAGAGCTGTACAGCTACTGCAACCGGCCTCGCAGGACCACCCTTGAG
Seq C2 exon
GCCCTCTGGGATTTCCCTCACACCACATCTGCCATTCCACCTGAATACCTGCTGGACCTCATCCCTCGCATCAGACCCCGCGCCTTCTCTATTGCCTCCTCCATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008920_MULTIEX3-5/7=1-6
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.008 A=0.014 C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=FE(18.7=100)
A:
PF0066715=FAD_binding_1=FE(33.3=100)
C2:
PF0066715=FAD_binding_1=FE(16.0=100)
Main Skipping Isoform:
ENSGALT00000014501fB1479
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAGCGCTGGAGACGTG
R:
AGCATGGAGGAGGCAATAGAGA
Band lengths:
229-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]