BtaEX6047537 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047061 | NDOR1
Description
Bos taurus NADPH dependent diflavin oxidoreductase 1 (NDOR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046158]
Coordinates
chr11:105885368-105886488:-
Coord C1 exon
chr11:105886367-105886488
Coord A exon
chr11:105886043-105886263
Coord C2 exon
chr11:105885368-105885475
Length
221 bp
Sequences
Splice sites
3' ss Seq
CAGCGTCCCATCCCCTGCAGGTG
3' ss Score
9.82
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
Exon sequences
Seq C1 exon
CTTTGCAGCTGGTGACCTGGTGCTGATCCAGCCCGAGAACACGGCCAGCCACGTCCAGCAGTTCTGCCAGGCGCTGGGCCTGGACCCCGAGCAGCACTTCACACTGCAGCCCCGGGAGCCAG
Seq A exon
GTGTCACCTGCCCTACGCGGCTGCCCCAGCCCTGCTCCGTGCGGCGCCTCGTGTCCCAGTACCTGGACATCGCCAGTGTCCCCCGCCGCTCCTTCTTTGAACTTCTGGCCTGTCTCTCCCCCCACGAGCTGGAGCGGGAGAAGCTTTGGGAATTCGGCTCTGCACGGGGCCAGGAGGAGCTTTGCGAGTACTGCACCCGGCCCCGCAGGACGGCCCTGGAG
Seq C2 exon
GTGCTGTGCGACTTCCCCCACACAGCTGCTGCTGTCCCCCCAGACTACCTGCTGGACCTGCTGCCCCTGATCCGGCCCCGGGCCTTCTCCATCGCCTCCTCTCTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047061-'12-15,'12-14,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.027 C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=FE(18.6=100)
A:
PF0066715=FAD_binding_1=FE(33.0=100)
C2:
PF0066715=FAD_binding_1=FE(15.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGCAGCTGGTGACCTGG
R:
GCAGAGAGGAGGCGATGGAG
Band lengths:
228-449
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]