MmuEX6099440 @ mm10
Exon Skipping
Gene
ENSMUSG00000006471 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:MGI Symbol;Acc:MGI:1926047]
Coordinates
chr2:25248905-25249526:-
Coord C1 exon
chr2:25249405-25249526
Coord A exon
chr2:25249100-25249320
Coord C2 exon
chr2:25248905-25249012
Length
221 bp
Sequences
Splice sites
3' ss Seq
CCTCCATGCCATTCCTGCAGGTG
3' ss Score
10.85
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
Exon sequences
Seq C1 exon
CTTTGCTGCTGGTGATGTTGTATTCATTTTGCCCTCTAACTCGGAGGCCCACACCCAGCAGTTCTGCCAAGTGTTGTGCCTGGACCCCAATCAGTTTTTCACACTTAAGCCACGGGAACCAG
Seq A exon
GTGTCCCTGACCCACCAGGGCTGCCTCAGCCCTGTACTGTGTGGAACCTCGTGTCCCAGTACTTGGACATTGCCAGTGTGCCCCGCCGTTCCTTCTTTGAGCTCCTGGCTTGTCTCTCCCAACATGCGCTGGAGCGAGAGAAGCTGCTGGAATTGAGCTCTGCCAGAGGTCAGGAAGAGCTCTGGGAGTACTGCAGTCGGCCCCGCAGAACCATCTTGGAG
Seq C2 exon
GTGCTATGCGACTTTCCACATACAGCGGGTGCCATTCCTCCAGACTACCTTTTGGACCTAATCCCTCGGATCCGCCCACGGGCCTTCTCCATTGCTTCCTCCCTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000006471-'14-26,'14-23,16-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.068 C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=FE(18.6=100)
A:
PF0066715=FAD_binding_1=FE(33.0=100)
C2:
PF0066715=FAD_binding_1=FE(15.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGCTGCTGGTGATGTTGT
R:
AGTAGGGAGGAAGCAATGGAGA
Band lengths:
229-450
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types