GgaINT0126434 @ galGal3
Intron Retention
Gene
ENSGALG00000008920 | NDOR1
Description
NA
Coordinates
chr17:1350273-1350978:+
Coord C1 exon
chr17:1350273-1350493
Coord A exon
chr17:1350494-1350870
Coord C2 exon
chr17:1350871-1350978
Length
377 bp
Sequences
Splice sites
5' ss Seq
GAGGTTGGC
5' ss Score
3.55
3' ss Seq
TGCTCTCCGTGGCTTTGCAGGCC
3' ss Score
9.68
Exon sequences
Seq C1 exon
GCACAGCCCTCCCTGCCCACTTGCTGCAGCCCTGCACCATCCGGCACCTGGTCACCCACTACCTGGACATCTCCTGCGTGCCACGGCGCTCCTTCTTTGAGCTCTTGTCCCACTTCTCTACGAACGAGCTGGAGCGGGAGAAGCTGCAGGAGTTCAGCTCTGCACAGGGCCAGGAAGAGCTGTACAGCTACTGCAACCGGCCTCGCAGGACCACCCTTGAG
Seq A exon
GTTGGCCTGGGGGAGCACAGCAAACCCATCCTTGAGGACTGTGCCATGGAAATAAAGCAGCCAGGGCAGAGGAGACAGATGATGAGCAGTAATTCATCGACTGAGGAATTTTAATTTACTTCACTCATTTTCTCAGGCGTCCTTGGAATAAGCAGGCTAAGACGTGCTCCAAATTCTTGGGCTCTGTTGTGTGGTTTCTGTGTTGCAGCCTGGGGACAAGGGTAGGGCAGTGGGACAAGGAGATTGGTACTCAGAGAATTCCTGCTGTGGGGCCTTTGGGTGAGGGTGGCAGTGCTAGAGAACAACCTTTGGTGCCCCAGAAAAGCAGGCAGGCTGCCTTCTGAGGTGCACCAGCTCTGCTCTCCGTGGCTTTGCAG
Seq C2 exon
GCCCTCTGGGATTTCCCTCACACCACATCTGCCATTCCACCTGAATACCTGCTGGACCTCATCCCTCGCATCAGACCCCGCGCCTTCTCTATTGCCTCCTCCATGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008920:ENSGALT00000014501:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=FE(33.3=100)
A:
NA
C2:
PF0066715=FAD_binding_1=FE(16.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGCCCACTTGCTGCAG
R:
CAGCATGGAGGAGGCAATAGA
Band lengths:
318-695
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]