HsaINT0111736 @ hg19
Intron Retention
Gene
ENSG00000188566 | NDOR1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:HGNC Symbol;Acc:29838]
Coordinates
chr9:140109250-140109654:+
Coord C1 exon
chr9:140109250-140109470
Coord A exon
chr9:140109471-140109546
Coord C2 exon
chr9:140109547-140109654
Length
76 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CTGAGACTCTCTTTGCCTAGGTG
3' ss Score
6.83
Exon sequences
Seq C1 exon
ATGTCTCCTCCCCCACGAGGCTGCCCCAGCCCTGCTCCATGCGGCACCTCGTGTCCCACTACCTGGACATCGCCAGCGTGCCTCGCCGCTCCTTCTTCGAACTCCTGGCCTGTCTATCCCTCCATGAGCTGGAGCGGGAGAAGCTGCTGGAGTTCAGTTCTGCCCAAGGCCAGGAGGAGCTCTTTGAATACTGCAACCGGCCCCGCAGGACCATCCTGGAG
Seq A exon
GTGAGATGGGAGGGCGGCAGGCCCAGCCCCTGAGCTACAGCCACGCTGCAGCCACCCTGAGACTCTCTTTGCCTAG
Seq C2 exon
GTGCTCTGTGACTTCCCGCACACAGCTGCCGCCATCCCTCCCGACTACCTGTTGGACCTCATCCCCGTTATCCGGCCGAGGGCCTTCTCCATCGCCTCCTCGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188566-NDOR1:NM_014434:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=FE(33.0=100)
A:
NA
C2:
PF0066715=FAD_binding_1=FE(15.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTCCTGGCCTGTCTATCCC
R:
AACAGGTAGTCGGGAGGGATG
Band lengths:
175-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)