RnoINT0099548 @ rn6
Intron Retention
Gene
ENSRNOG00000010616 | Ndor1
Description
NADPH dependent diflavin oxidoreductase 1 [Source:RGD Symbol;Acc:1308479]
Coordinates
chr3:2468325-2468737:-
Coord C1 exon
chr3:2468517-2468737
Coord A exon
chr3:2468433-2468516
Coord C2 exon
chr3:2468325-2468432
Length
84 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
3' ss Seq
GTAAGACTCCCTTTATCCAGGTG
3' ss Score
5.27
Exon sequences
Seq C1 exon
GTGTCCCTTACCCACCAGGGCTGCCTCAGCACTGCACTGTGTGGCACCTTGTGTCGCAGTACTTGGACATTGCCAGCGTGCCCCGCCGTTCCTTCTTTGAGCTCTTGGCTTGTCTCTCCCCACATGCACTGGAGCGGGAGAAGCTGCTGGAATTCAGCTCCGCCAGAGGACAGGAAGAGCTCTGGGAGTACTGTAATCGGCCCCGCAGAACCATCTTGGAG
Seq A exon
GTGGGCTTATGGACAGACAGGTGGATATGGGCCCCTGAGCTCTAGTATGCACACCACCACCACAGTAAGACTCCCTTTATCCAG
Seq C2 exon
GTGCTGTGTGACTTCCCACACACGGCGGGTGCCATTCCTCCAGACTACCTTTTGGACTTGATCCCTCGGATCCGTCCCCGGGCCTTCTCCATTGCTTCATCCCTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010616:ENSRNOT00000014445:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=FE(33.0=100)
A:
NA
C2:
PF0066715=FAD_binding_1=FE(15.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTTGGCTTGTCTCTCCCCA
R:
TAGTCTGGAGGAATGGCACCC
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]