BtaINT0100320 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047061 | NDOR1
Description
Bos taurus NADPH dependent diflavin oxidoreductase 1 (NDOR1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046158]
Coordinates
chr11:105885368-105886263:-
Coord C1 exon
chr11:105886043-105886263
Coord A exon
chr11:105885476-105886042
Coord C2 exon
chr11:105885368-105885475
Length
567 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGC
5' ss Score
8.99
3' ss Seq
CCCTGCCGCTGTCCCCCCAGGTG
3' ss Score
12.42
Exon sequences
Seq C1 exon
GTGTCACCTGCCCTACGCGGCTGCCCCAGCCCTGCTCCGTGCGGCGCCTCGTGTCCCAGTACCTGGACATCGCCAGTGTCCCCCGCCGCTCCTTCTTTGAACTTCTGGCCTGTCTCTCCCCCCACGAGCTGGAGCGGGAGAAGCTTTGGGAATTCGGCTCTGCACGGGGCCAGGAGGAGCTTTGCGAGTACTGCACCCGGCCCCGCAGGACGGCCCTGGAG
Seq A exon
GTAGGCAGAGGCTGGGGGTAGGGTCCGGGGGAGGACCTGGACCCGGGGTAAGGGGCCAGGGGCCAGGGGAGGGCCTGGGCCCCACGGGATGGCCCTGGAGGTGGGCAGGGGCCGGGAGAGAGCCTGGGCCCCACAGGACGGCCCTGGAGATGGGCAGGGTCCGGGGGAGGACCTGGGCCCCACGGAATGGCCCTGGAGGTGGGCAGGGGCTGGGGGAAGGCAGGGGCCAGGGGAGGGCCTGGGCCCCACTGGACGGCCCTGGAGGTGGGCAGGGGCCGGGAGAGGGCCTGGGCGCCACGGGACAGCCCTGGAGGTGGGCAGGGGCTGGGGGAAGGCAGGGGCCAGGGGAGGGCCTGGGCCCCACTGGACGGCCCTGGAGGTGGGCAGGGGCCGGGAGAGGGCCTGGGCCCCACGGGACGGCCCTGGAGGTGGGCAGGGTCCGGGGGAGGACCTGGGCCCCACGGGACGGCCCTGGAGGTGGGCATTGGCTGGCAAACGGGCCTGGGCCCTTTGCTGCAGCCATGTGTGGCCCTGCCAGCCACGGCTCCCCTGCCGCTGTCCCCCCAG
Seq C2 exon
GTGCTGTGCGACTTCCCCCACACAGCTGCTGCTGTCCCCCCAGACTACCTGCTGGACCTGCTGCCCCTGATCCGGCCCCGGGCCTTCTCCATCGCCTCCTCTCTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047061:ENSBTAT00000066145:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0066715=FAD_binding_1=FE(33.0=100)
A:
NA
C2:
PF0066715=FAD_binding_1=FE(15.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCACCTGCCCTACGC
R:
CAGAGAGGAGGCGATGGAGAA
Band lengths:
326-893
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development