GgaEX0013113 @ galGal4
Exon Skipping
Gene
ENSGALG00000008951 | FAM73A
Description
family with sequence similarity 73, member A [Source:HGNC Symbol;Acc:HGNC:24741]
Coordinates
chr8:17849547-17850275:-
Coord C1 exon
chr8:17850203-17850275
Coord A exon
chr8:17849774-17849860
Coord C2 exon
chr8:17849547-17849645
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTTTCTAAAACCTTTTCTAGATA
3' ss Score
6.98
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GACTGAAATGTTTGAATGTCTCGGAGACAGTGACTTCCTTGCTAAGCTCCATTGTATTCGACAAGCTTTCCAG
Seq A exon
ATAATTCTTTCAGAAACAGCAAACAGAATATTTCTTGCTGAAAGTGGAAGAAAAATTTTATCTGCCCTAATTGTGAGAGCACGAAAG
Seq C2 exon
AATCCAAAGAAATTTGAAGATGTCTTTGATGAAATGATATATTTCTTGGAACAAACGGATCACTGGGATAATACTGAAATGGAACTTGCTGCTAGAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008951_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAAATGTTTGAATGTCTCGGAGA
R:
TCCTCTAGCAGCAAGTTCCAT
Band lengths:
171-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]