GgaEX0013113 @ galGal3
Exon Skipping
Gene
ENSGALG00000008951 | FAM73A
Description
NA
Coordinates
chr8:19650408-19651136:-
Coord C1 exon
chr8:19651064-19651136
Coord A exon
chr8:19650635-19650721
Coord C2 exon
chr8:19650408-19650506
Length
87 bp
Sequences
Splice sites
3' ss Seq
TTTTCTAAAACCTTTTCTAGATA
3' ss Score
6.98
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
GACTGAAATGTTTGAATGTCTCGGAGACAGTGACTTCCTTGCTAAGCTCCATTGTATTCGACAAGCTTTCCAG
Seq A exon
ATAATTCTTTCAGAAACAGCAAACAGAATATTTCTTGCTGAAAGTGGAAGAAAAATTTTATCTGCCCTAATTGTGAGAGCACGAAAG
Seq C2 exon
AATCCAAAGAAATTTGAAGATGTCTTTGATGAAATGATATATTTCTTGGAACAAACGGATCACTGGGATAATACTGAAATGGAACTTGCTGCTAGAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008951-'8-10,'8-9,9-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(4.4=100)
A:
PF102654=DUF2217=FE(5.1=100)
C2:
PF102654=DUF2217=FE(5.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAAATGTTTGAATGTCTCGGAGA
R:
TCCTCTAGCAGCAAGTTCCAT
Band lengths:
171-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]