BtaEX0014040 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031044 | FAM73A
Description
family with sequence similarity 73, member A [Source:HGNC Symbol;Acc:HGNC:24741]
Coordinates
chr3:67073099-67075995:-
Coord C1 exon
chr3:67075923-67075995
Coord A exon
chr3:67075017-67075103
Coord C2 exon
chr3:67073099-67073197
Length
87 bp
Sequences
Splice sites
3' ss Seq
TGGGGATGGATATTTTTCAGGTA
3' ss Score
4.81
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
AACTGAAATGTTGGAGTGCCTAGGAGACAGTGATTTTCTTGCCAAACTTCACTGTATTCGACAGGCTTTTCAG
Seq A exon
GTAATTCTTTCAGAAACAGCCAACAGGATATTCCTTGCTGAGAGTGGAAGGAAAATTTTATCAGCGTTAATTGTAAAAGCACGAAAG
Seq C2 exon
AATCCAAAGAAGTTTGAAGATGTTTTTGATGAAATGATCTATTTTTTAGAGCAGACTGATCACTGGGATAATACTGAAATGGAACTTGCTGCTAGAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031044-'14-16,'14-15,15-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(4.4=100)
A:
PF102654=DUF2217=FE(5.1=100)
C2:
PF102654=DUF2217=FE(5.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAAATGTTGGAGTGCCTAGG
R:
TCCTCTAGCAGCAAGTTCCAT
Band lengths:
171-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development