DreEX0031950 @ danRer10
Exon Skipping
Gene
ENSDARG00000020596 | fam73a
Description
family with sequence similarity 73, member A [Source:ZFIN;Acc:ZDB-GENE-041010-193]
Coordinates
chr2:8871552-8873897:-
Coord C1 exon
chr2:8873825-8873897
Coord A exon
chr2:8871721-8871807
Coord C2 exon
chr2:8871552-8871650
Length
87 bp
Sequences
Splice sites
3' ss Seq
TACTTTGTATTTTAATTCAGGTC
3' ss Score
8.59
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
AACAGAAATGCTTGAATGTCTTGGAGACGCCGATTTCCTGGCGAAGCTGCACTGTGTACGGCAGGCATGTCAG
Seq A exon
GTCATCTTGTGTGAAAGGGCAACTAGAGCATTTCTGGCTGACACAGGGAAGAGGATATTGTCTGCAATAATTGCTAGAGCTAGAAAG
Seq C2 exon
AGTCCAAAGAGATTCGAAGAGGTGTTCGAAGAAATGATCTCCTTTTTGGAGCATACCGACCACTGGGAGAACACAGAAAATGAGCTTTCCTCAAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000020596-'13-19,'13-17,14-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(4.4=100)
A:
PF102654=DUF2217=FE(5.2=100)
C2:
PF102654=DUF2217=FE(5.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAATGCTTGAATGTCTTGGA
R:
CCCTCTTGAGGAAAGCTCATT
Band lengths:
171-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]