HsaEX0024621 @ hg38
Exon Skipping
Gene
ENSG00000180488 | MIGA1
Description
mitoguardin 1 [Source:HGNC Symbol;Acc:HGNC:24741]
Coordinates
chr1:77859314-77861322:+
Coord C1 exon
chr1:77859314-77859386
Coord A exon
chr1:77860040-77860580
Coord C2 exon
chr1:77861224-77861322
Length
541 bp
Sequences
Splice sites
3' ss Seq
GGGGATGAATATTTTTTCAGGTA
3' ss Score
4.72
5' ss Seq
AAGGTTTGT
5' ss Score
7.81
Exon sequences
Seq C1 exon
AACTGAAATGTTGGAGTGCCTAGGAGACAGTGATTTTCTTGCCAAACTTCACTGTATTCGACAGGCTTTTCAG
Seq A exon
GTAATTCTTTCAGAATCAGCTAACAGGATATTCCTCGCTGAGAGCGGAAGGAAAATTTTATCAGCTTTAATTGTGAAAGCACGAAAGGTAAACTTGTTCTGTTGGCAAGATTTTTACCATTTACAAAAGTTGTTTTTACCCTTTGAACTGAAGATTAAGACATTAAATTTTTGATAGAAGAAAAATTTTTGTGGATAGTTGAAAAGGGCATTAAGTTATGCTCGGGTTGAACTATGTATAAAGTCCACACTATTTCAACCAAGTTGTTTCTCATAAATTATTTCCAGTTTGCCATAAACTCTGTAAATGTCATGGTGAGAATTATCATTAGATCTGCTGCTATAACCATCACTGTTATTATTACTAATGCCTCCTCTTTTATTACCTCAATCCTGTTCAGGAAGAGGGTTACAGGAAATAGCGTAGGTCTCAGAAATCTGGAATACAAATTGAACTGCCTCATCTTCATGTAGTTGAATGAGGCAGAAGCAATGACAAGAACTTCATTCAGACTGTAAGGAACCACCTTACTTTATGCAAG
Seq C2 exon
AATCCAAAGAAGTTTGAAGATGTTTTTGATGAAATGATCTATTTTTTAGAGCAGACCGATCACTGGGGTAGTACTGAAATGGAACTTGCTGCTAGAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000180488_MULTIEX2-4/9=3-5
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(4.4=100)
A:
PF102654=DUF2217=FE(5.1=100)
C2:
PF102654=DUF2217=FE(5.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development