GgaEX0013158 @ galGal3
Exon Skipping
Gene
ENSGALG00000008974 | E1BWB2_CHICK
Description
NA
Coordinates
chr8:19687171-19689279:+
Coord C1 exon
chr8:19687171-19687224
Coord A exon
chr8:19688231-19688393
Coord C2 exon
chr8:19689217-19689279
Length
163 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTATTTCTCACTTAGAAC
3' ss Score
7.27
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GGCAGTTGTCAGGACTGTAAAGTCAGAGGACCCAACCTTTGGGCATGCTTGGAG
Seq A exon
AACTCTTGGACTCTTATTGAAAAACTTAATTTCATACCAACAGTTCCAGTTCAATTTTCTGATTACAGTAGTACATTTAAGTTTCATGCTGTGATACATCTCCTCTTGGATGAATTAACATCTTGTCTTCACCTTTTGTGCATAGAAAAACAGCCAGCACATG
Seq C2 exon
AACAGATGTACATATGTTGGCTGTGGTGAAACCCATGTTGATCACAGTACCACCCATTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008974-'8-6,'8-5,9-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214814=zf-UBP=PU(22.7=83.3)
A:
NO
C2:
PF0214814=zf-UBP=FE(30.3=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGTTGTCAGGACTGTAAAGT
R:
TGGGAATGGGTGGTACTGTGA
Band lengths:
116-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]