GgaEX0013158 @ galGal4
Exon Skipping
Gene
ENSGALG00000008974 | USP33
Description
ubiquitin specific peptidase 33 [Source:HGNC Symbol;Acc:HGNC:20059]
Coordinates
chr8:17885792-17887900:+
Coord C1 exon
chr8:17885792-17885845
Coord A exon
chr8:17886852-17887014
Coord C2 exon
chr8:17887838-17887900
Length
163 bp
Sequences
Splice sites
3' ss Seq
GTTTTTTATTTCTCACTTAGAAC
3' ss Score
7.27
5' ss Seq
ATGGTGAGA
5' ss Score
7.23
Exon sequences
Seq C1 exon
GGCAGTTGTCAGGACTGTAAAGTCAGAGGACCCAACCTTTGGGCATGCTTGGAG
Seq A exon
AACTCTTGGACTCTTATTGAAAAACTTAATTTCATACCAACAGTTCCAGTTCAATTTTCTGATTACAGTAGTACATTTAAGTTTCATGCTGTGATACATCTCCTCTTGGATGAATTAACATCTTGTCTTCACCTTTTGTGCATAGAAAAACAGCCAGCACATG
Seq C2 exon
AACAGATGTACATATGTTGGCTGTGGTGAAACCCATGTTGATCACAGTACCACCCATTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008974_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0214814=zf-UBP=PU(22.7=83.3)
A:
NO
C2:
PF0214814=zf-UBP=FE(30.3=100)
Main Inclusion Isoform:
ENSGALT00000014598fB1491
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGTTGTCAGGACTGTAAAGT
R:
TGGGAATGGGTGGTACTGTGA
Band lengths:
116-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]