GgaEX0013640 @ galGal3
Exon Skipping
Gene
ENSGALG00000009287 | ATF2_CHICK
Description
NA
Coordinates
chr7:17804827-17810834:+
Coord C1 exon
chr7:17804827-17804955
Coord A exon
chr7:17806579-17806653
Coord C2 exon
chr7:17810656-17810834
Length
75 bp
Sequences
Splice sites
3' ss Seq
GTTTTGATGTCTGATTGTAGAGA
3' ss Score
5.45
5' ss Seq
AATGTGAGC
5' ss Score
5.2
Exon sequences
Seq C1 exon
ATGCCTCTAGATCTGTCTCCTCTTGCAACACCAATTATAAGAAACAAAATTGAAGAACCTTCTGTTGTAGAGACGACTCATCAAGATAGTCCTTTACCTCATCCAGAGTCTACTACCAATGATGAAAAG
Seq A exon
AGACAAGCTGAGCAAGGATGAGGGTGCTGCTTGGAGTATGCTGCTGCTGAATGTGGCCTGCAGAAGTTGAGAAAT
Seq C2 exon
GAAGTGTCCCTGCAGCAGACTGCACAGCCCACATCAACAATAGTTCGTCCAGCATCGCTACAGGTTCCTAACGTACTACTTACAAGTTCTGACTCAAGTGTTATTATTCAGCAGGCAATACCATCACCAACGTCTAGTACTGTTATTACCCAGGCTCCATCCTCTAACAGACCAATAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009287-'8-8,'8-7,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.814 A=1.000 C2=0.567
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCTCCTCTTGCAACACCA
R:
CTGTAGCGATGCTGGACGAAC
Band lengths:
180-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]