GgaEX0013640 @ galGal4
Exon Skipping
Gene
ENSGALG00000009287 | ATF2
Description
Cyclic AMP-dependent transcription factor ATF-2 [Source:UniProtKB/Swiss-Prot;Acc:O93602]
Coordinates
chr7:16173365-16179372:+
Coord C1 exon
chr7:16173365-16173493
Coord A exon
chr7:16175117-16175191
Coord C2 exon
chr7:16179194-16179372
Length
75 bp
Sequences
Splice sites
3' ss Seq
GTTTTGATGTCTGATTGTAGAGA
3' ss Score
5.45
5' ss Seq
AATGTGAGC
5' ss Score
5.2
Exon sequences
Seq C1 exon
ATGCCTCTAGATCTGTCTCCTCTTGCAACACCAATTATAAGAAACAAAATTGAAGAACCTTCTGTTGTAGAGACGACTCATCAAGATAGTCCTTTACCTCATCCAGAGTCTACTACCAATGATGAAAAG
Seq A exon
AGACAAGCTGAGCAAGGATGAGGGTGCTGCTTGGAGTATGCTGCTGCTGAATGTGGCCTGCAGAAGTTGAGAAAT
Seq C2 exon
GAAGTGTCCCTGCAGCAGACTGCACAGCCCACATCAACAATAGTTCGTCCAGCATCGCTACAGGTTCCTAACGTACTACTTACAAGTTCTGACTCAAGTGTTATTATTCAGCAGGCAATACCATCACCAACGTCTAGTACTGTTATTACCCAGGCTCCATCCTCTAACAGACCAATAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009287_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.890 A=1.000 C2=0.583
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000033263fB1563
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCTCCTCTTGCAACACCA
R:
CTGTAGCGATGCTGGACGAAC
Band lengths:
180-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]