GgaEX0013762 @ galGal3
Exon Skipping
Gene
ENSGALG00000009357 | RAPGEF4
Description
NA
Coordinates
chr7:18856490-18884130:-
Coord C1 exon
chr7:18884030-18884130
Coord A exon
chr7:18881642-18881703
Coord C2 exon
chr7:18856490-18856562
Length
62 bp
Sequences
Splice sites
3' ss Seq
ATCATTCCCTGCACTTTCAGAGC
3' ss Score
8.85
5' ss Seq
CAGGTAACA
5' ss Score
8.88
Exon sequences
Seq C1 exon
CCTAAGTGGTCACATCAGCAGCAAGAACGCAGCATGGATAAAAAAACTAAAATGCACCCTTAGGGCTACTTGCTGTGCAGGACCCATAATAAGACATCAAT
Seq A exon
AGCAGCAGGGGATTCACTGATGCTGACTTGAGGATATTGAATTTGCTTAGACCTATGATCAG
Seq C2 exon
AAATACCGGCAGTATATGTCTGGACTTCTTACTCCTCCTTATGGTGTTATGGAAACTGGCTCCAACAATGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009357-'6-9,'6-6,7-9
Average complexity
C3
Mappability confidence:
80%=100=67%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.300
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0002724=cNMP_binding=PD(3.3=12.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAAGAACGCAGCATGGATA
R:
GGAGCCAGTTTCCATAACACCA
Band lengths:
145-207
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]