GgaEX0013757 @ galGal3
Exon Skipping
Gene
ENSGALG00000009357 | RAPGEF4
Description
NA
Coordinates
chr7:18856490-18922081:-
Coord C1 exon
chr7:18921993-18922081
Coord A exon
chr7:18912823-18912969
Coord C2 exon
chr7:18856490-18856562
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTTCCTTTTTTAATTCAAAGGAT
3' ss Score
9.01
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
TATTCCGTCAGGGTGATATTGGGTCAAACTGGTATGCTGTTCTGACAGGATCGCTGGATGTGAAGGTTTCTGATACAAGCAACCACCAG
Seq A exon
GATGCTGTAACAATATGCACCCTGGGAATAGGAACTGCTTTTGGAGAGTCCATTCTGGATAACACTCCTCGCCATGCTACCATTGTTACCAGAGAATATAGCGAGCTCCTTCGAATTGAGCAGAAGGACTTCAAAGCACTTTGGGAG
Seq C2 exon
AAATACCGGCAGTATATGTCTGGACTTCTTACTCCTCCTTATGGTGTTATGGAAACTGGCTCCAACAATGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009357-'3-9,'3-3,4-9
Average complexity
C1
Mappability confidence:
85%=100=78%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.300
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=FE(31.5=100)
A:
PF0002724=cNMP_binding=FE(52.2=100)
C2:
PF0002724=cNMP_binding=PD(3.3=12.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATTCCGTCAGGGTGATATTGGGT
R:
TGTCATTGTTGGAGCCAGTTTCC
Band lengths:
162-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]