RnoEX0074046 @ rn6
Exon Skipping
Gene
ENSRNOG00000001516 | Rapgef4
Description
Rap guanine nucleotide exchange factor 4 [Source:RGD Symbol;Acc:621886]
Coordinates
chr3:58692939-58802658:+
Coord C1 exon
chr3:58692939-58693027
Coord A exon
chr3:58708924-58709070
Coord C2 exon
chr3:58802586-58802658
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTTTGGGGGGGTGTTCTCAGGAT
3' ss Score
4.07
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
TGTTTCGACAAGGGGACATTGGAACCAACTGGTATGCTGTCCTAGCTGGGTCTTTGGATGTTAAAGTGTCTGAGACCAGCAGTCACCAG
Seq A exon
GATGCGGTGACCATCTGTACCCTGGGAATTGGGACAGCCTTTGGAGAGTCCATTCTCGACAACACACCTCGTCATGCAACCATTGTTACCAGAGAGAACAGTGAGCTCCTCCGTATCGAGCAGGAAGACTTTAAGGCACTATGGGAG
Seq C2 exon
AAATACCGACAGTATATGGCCGGACTTCTGGCTCCTCCCTATGGTGTTATGGAAACGGGCTCTAACAATGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001516-'5-10,'5-7,7-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.260
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=FE(31.5=100)
A:
PF0002724=cNMP_binding=FE(52.2=100)
C2:
PF0002724=cNMP_binding=PD(3.3=12.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTCGACAAGGGGACATTGG
R:
TGTCATTGTTAGAGCCCGTTTCC
Band lengths:
162-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]