BtaEX6008994 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020984 | RAPGEF4
Description
Rap guanine nucleotide exchange factor (GEF) 4 [Source:HGNC Symbol;Acc:HGNC:16626]
Coordinates
chr2:23794579-23910190:-
Coord C1 exon
chr2:23910102-23910190
Coord A exon
chr2:23892657-23892803
Coord C2 exon
chr2:23794579-23794651
Length
147 bp
Sequences
Splice sites
3' ss Seq
CTGGTTTTTGGGGTTCTCAGGAC
3' ss Score
6.93
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
TATTTCGCCAAGGTGATATTGGAACCAACTGGTATGCTGTCCTGGCAGGGTCTTTGGATGTTAAAGTTTCTGAGACCAGCAGTCACCAG
Seq A exon
GACGCAGTGACCATCTGCACTCTGGGAATTGGGACGGCCTTTGGAGAGTCCATTCTGGACAACACCCCACGCCATGCGACCATCGTTACCAGGGAGAGCAGTGAGCTGCTCCGCATCGAGCAGAAGGACTTCAAGGCACTATGGGAG
Seq C2 exon
AAATATCGACAGTACATGGCAGGACTTCTGGCTCCTCCTTATGGTGTTATGGAAACGGGCTCTAACAATGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020984-'2-11,'2-3,7-11=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.240
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=FE(31.5=100)
A:
PF0002724=cNMP_binding=FE(52.2=100)
C2:
PF0002724=cNMP_binding=PD(3.3=12.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGGTGATATTGGAACCAACTGG
R:
TGTCATTGTTAGAGCCCGTTTCC
Band lengths:
154-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]