DreEX6034768 @ danRer10
Exon Skipping
Gene
ENSDARG00000079872 | rapgef4
Description
Rap guanine nucleotide exchange factor (GEF) 4 [Source:ZFIN;Acc:ZDB-GENE-070912-385]
Coordinates
chr9:2984428-3019506:-
Coord C1 exon
chr9:3019418-3019506
Coord A exon
chr9:3018528-3018674
Coord C2 exon
chr9:2984428-2984500
Length
147 bp
Sequences
Splice sites
3' ss Seq
CTGTTCCTCCTCATGTGAAGGAT
3' ss Score
6.71
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
TGTACAGGCAGGGTGACATCGGCACTAACTGGTACACCGTCCTGTCCGGTTCTCTAGACGTCAAAGTCTCCGAAACAGCAAACCATCAG
Seq A exon
GATGCGGTCACCATCTGCACGCTGGGCATCGGCACTGCTTTTGGAGAGTCTATCCTGGATAACACACCCCGCCATGCCACCATCGTCACCCGAGAGTTCAGCGAGCTGCTGCGGATCGAGCAGAAGGACTTCAGGAACCTGTGGGAG
Seq C2 exon
AATTATCGTCAGTGTATGGCTGGTTTGCTGGTCCCTCCCTATGGTGTTATGGACAGCGGCCCAAACGCTGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079872-'2-5,'2-3,3-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.240
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=FE(31.5=100)
A:
PF0002724=cNMP_binding=FE(52.2=100)
C2:
PF0002724=cNMP_binding=PD(3.3=12.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACAGGCAGGGTGACATCG
R:
GCCGCTGTCCATAACACCATA
Band lengths:
149-296
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]