HsaEX6016769 @ hg19
Exon Skipping
Gene
ENSG00000091428 | RAPGEF4
Description
Rap guanine nucleotide exchange factor (GEF) 4 [Source:HGNC Symbol;Acc:16626]
Coordinates
chr2:173662253-173782565:+
Coord C1 exon
chr2:173662253-173662341
Coord A exon
chr2:173679007-173679153
Coord C2 exon
chr2:173782530-173782565
Length
147 bp
Sequences
Splice sites
3' ss Seq
TAGTTTTTTGGGATCCTCAGGAT
3' ss Score
3.94
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
TATTTCGCCAGGGTGATATTGGAACAAACTGGTATGCTGTCCTGGCAGGGTCTTTGGATGTTAAAGTATCTGAGACCAGCAGTCACCAG
Seq A exon
GATGCTGTGACCATCTGTACCCTGGGAATTGGGACGGCCTTTGGAGAGTCCATTCTGGACAACACACCCCGCCATGCAACCATCGTTACCAGGGAGAGCAGTGAACTGCTCCGCATCGAGCAGAAGGACTTCAAGGCACTATGGGAG
Seq C2 exon
AAATATCGACAGTATATGGCAGGACTTCTGGCTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000091428-'4-11,'4-7,5-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.190
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=FE(31.5=100)
A:
PF0002724=cNMP_binding=FE(52.2=100)
C2:
PF0002724=cNMP_binding=PD(3.3=12.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCGCCAGGGTGATATTGGA
R:
GGAGCCAGAAGTCCTGCCATA
Band lengths:
122-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)