MmuEX6102156 @ mm9
Exon Skipping
Gene
ENSMUSG00000049044 | Rapgef4
Description
Rap guanine nucleotide exchange factor (GEF) 4 [Source:MGI Symbol;Acc:MGI:1917723]
Coordinates
chr2:71872088-71975375:+
Coord C1 exon
chr2:71872088-71872176
Coord A exon
chr2:71883159-71883305
Coord C2 exon
chr2:71975299-71975375
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTGGGGGGGGGGCTTCTCAGGAT
3' ss Score
0.24
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
TGTTTCGCCAAGGGGATATTGGAACCAACTGGTATGCTGTCCTGGCTGGGTCTTTGGATGTTAAAGTGTCTGAGACCAGCAGTCACCAG
Seq A exon
GATGCGGTGACCATCTGCACTCTGGGAATTGGGACAGCCTTTGGAGAGTCCATTCTGGATAACACCCCTCGCCATGCAACCATCGTTACCAGGGAGAGCAGCGAACTTCTCCGCATTGAGCAGGAGGACTTCAAGGCACTATGGGAG
Seq C2 exon
AAATACCGACAGTATATGGCCGGACTTCTGGCTCCTCCCTATGGTGTTATGGAAACGGGCTCTAACAATGACAGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049044-'5-6,'5-3,7-6=AN
Average complexity
A_S
Mappability confidence:
91%=100=83%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.314
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=FE(31.5=100)
A:
PF0002724=cNMP_binding=FE(52.2=100)
C2:
PF0002724=cNMP_binding=PD(3.3=12.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTCGCCAAGGGGATATTG
R:
ACTGTCATTGTTAGAGCCCGT
Band lengths:
164-311
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: