MmuEX6102156 @ mm10
Exon Skipping
Gene
ENSMUSG00000049044 | Rapgef4
Description
Rap guanine nucleotide exchange factor (GEF) 4 [Source:MGI Symbol;Acc:MGI:1917723]
Coordinates
chr2:72034031-72137314:+
Coord C1 exon
chr2:72034031-72034119
Coord A exon
chr2:72045102-72045248
Coord C2 exon
chr2:72137242-72137314
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTGGGGGGGGGGCTTCTCAGGAT
3' ss Score
0.24
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
TGTTTCGCCAAGGGGATATTGGAACCAACTGGTATGCTGTCCTGGCTGGGTCTTTGGATGTTAAAGTGTCTGAGACCAGCAGTCACCAG
Seq A exon
GATGCGGTGACCATCTGCACTCTGGGAATTGGGACAGCCTTTGGAGAGTCCATTCTGGATAACACCCCTCGCCATGCAACCATCGTTACCAGGGAGAGCAGCGAACTTCTCCGCATTGAGCAGGAGGACTTCAAGGCACTATGGGAG
Seq C2 exon
AAATACCGACAGTATATGGCCGGACTTCTGGCTCCTCCCTATGGTGTTATGGAAACGGGCTCTAACAATGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000049044-'12-16,'12-8,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.206
Domain overlap (PFAM):
C1:
PF0002724=cNMP_binding=FE(31.5=100)
A:
PF0002724=cNMP_binding=FE(52.2=100)
C2:
PF0002724=cNMP_binding=PD(3.3=12.0)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTCGCCAAGGGGATATTG
R:
TGTCATTGTTAGAGCCCGTTTCC
Band lengths:
162-309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types