GgaEX0013961 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr9:21871730-21872974:-
Coord C1 exon
chr9:21872846-21872974
Coord A exon
chr9:21872500-21872628
Coord C2 exon
chr9:21871730-21871855
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTGGCACTTTCCTTTCTCAGGGT
3' ss Score
9.81
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
AATGTCTCCCTGGCAAGTACGGCCCCAACTGCAGCTTGGACTGCTCATGCCAGCACAACGGCACCTGCGACAGGTTCACGGGCTGCTGCCTCTGCCCCGCGGGGTTCTACGGGCGCTCCTGTGAGCACG
Seq A exon
GGTGCCCCCCCGGGTTTTATGGGCTGAGCTGCCTTCATGCATGTGCCTGTAAAAACGGAGCGAGCTGCGATGCCGTGATGGGACAGTGCATTTGTCCCTCGGGGTACCATGGTATCCACTGTGAGAAAG
Seq C2 exon
GCTGTGCCAGTGGGCGCTTCGGTGAGCGGTGCCAGCGCCAGTGCGACTGTGGAGGAGCTCCCTGCGACCCGGCCACTGGGAAATGCCTCTGCCCACCTGGAAAGACTGGGGACAAGTGTGACATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009458-'32-39,'32-38,33-39
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(63.0=65.9)
A:
PF0005319=Laminin_EGF=PD(34.8=36.4),PF079748=EGF_2=WD(100=61.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCTCCCTGGCAAGTACGG
R:
TTGTCCCCAGTCTTTCCAGGT
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]