GgaEX0013961 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1NXF9]
Coordinates
chr9:19792970-19794214:-
Coord C1 exon
chr9:19794086-19794214
Coord A exon
chr9:19793740-19793868
Coord C2 exon
chr9:19792970-19793095
Length
129 bp
Sequences
Splice sites
3' ss Seq
CTGGCACTTTCCTTTCTCAGGGT
3' ss Score
9.81
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
AATGTCTCCCTGGCAAGTACGGCCCCAACTGCAGCTTGGACTGCTCATGCCAGCACAACGGCACCTGCGACAGGTTCACGGGCTGCTGCCTCTGCCCCGCGGGGTTCTACGGGCGCTCCTGTGAGCACG
Seq A exon
GGTGCCCCCCCGGGTTTTATGGGCTGAGCTGCCTTCATGCATGTGCCTGTAAAAACGGAGCGAGCTGCGATGCCGTGATGGGACAGTGCATTTGTCCCTCGGGGTACCATGGTATCCACTGTGAGAAAG
Seq C2 exon
GCTGTGCCAGTGGGCGCTTCGGTGAGCGGTGCCAGCGCCAGTGCGACTGTGGAGGAGCTCCCTGCGACCCGGCCACTGGGAAATGCCTCTGCCCACCTGGAAAGACTGGGGACAAGTGTGACATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009458_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0005319=Laminin_EGF=PU(63.0=65.9)
A:
PF0005319=Laminin_EGF=PD(34.8=36.4),PF079748=EGF_2=WD(100=61.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGTCTCCCTGGCAAGTACGG
R:
TTGTCCCCAGTCTTTCCAGGT
Band lengths:
243-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]