GgaEX0014408 @ galGal3
Exon Skipping
Gene
ENSGALG00000009728 | F1NWI3_CHICK
Description
NA
Coordinates
chr2:24106382-24119072:-
Coord C1 exon
chr2:24118992-24119072
Coord A exon
chr2:24118828-24118901
Coord C2 exon
chr2:24106382-24106522
Length
74 bp
Sequences
Splice sites
3' ss Seq
AGGCTTCTGTTTAACCACAGATG
3' ss Score
7.15
5' ss Seq
AGGGTAAAT
5' ss Score
5.83
Exon sequences
Seq C1 exon
GTTAACGATTTTGTGAGAGATAAGTTTATGAGTAAAGACGGCTCTGTCCCACTGGCTGCAGAAATTCTTGCTGGTGGCTGT
Seq A exon
ATGCGGTTCAAGAGCAGACTCTACTAGAGCATCTCAGTTCTTTCCTAGATAGGCCAGCCGCTCTTGATGAAAGG
Seq C2 exon
GCTGGAGGTTCTCAAGTGATCTTTACCAACCCACTAGAAATTGTCAAGATTCGATTACAGGTGGCTGGAGAAATTACTACTGGCCCTCGTGTCAGTGCCCTCACTGTACTACGGGACTTAGGCTTCTTTGGTCTCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009728-'20-26,'20-23,21-26
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(12.2=44.4),PF0015322=Mito_carr=PU(14.1=48.1)
A:
NO
C2:
PF0015322=Mito_carr=FE(50.0=100)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAGACGGCTCTGTCCCACT
R:
AGTCCCGTAGTACAGTGAGGG
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event