GgaEX0014408 @ galGal4
Exon Skipping
Gene
ENSGALG00000009728 | SLC25A13
Description
calcium-binding mitochondrial carrier protein Aralar2 [Source:RefSeq peptide;Acc:NP_001012967]
Coordinates
chr2:24273091-24285411:-
Coord C1 exon
chr2:24285331-24285411
Coord A exon
chr2:24285167-24285240
Coord C2 exon
chr2:24273091-24273231
Length
74 bp
Sequences
Splice sites
3' ss Seq
AGGCTTCTGTTTAACCACAGATG
3' ss Score
7.15
5' ss Seq
AGGGTAAAT
5' ss Score
5.83
Exon sequences
Seq C1 exon
GTTAACGATTTTGTGAGAGATAAGTTTATGAGTAAAGACGGCTCTGTCCCACTGGCTGCAGAAATTCTTGCTGGTGGCTGT
Seq A exon
ATGCGGTTCAAGAGCAGACTCTACTAGAGCATCTCAGTTCTTTCCTAGATAGGCCAGCCGCTCTTGATGAAAGG
Seq C2 exon
GCTGGAGGTTCTCAAGTGATCTTTACCAACCCACTAGAAATTGTCAAGATTCGATTACAGGTGGCTGGAGAAATTACTACTGGCCCTCGTGTCAGTGCCCTCACTGTACTACGGGACTTAGGCTTCTTTGGTCTCTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009728_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0015322=Mito_carr=PD(12.2=44.4),PF0015322=Mito_carr=PU(14.1=48.1)
A:
NO
C2:
PF0015322=Mito_carr=FE(50.0=100)
Main Inclusion Isoform:
ENSGALT00000015533fB1670
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAAGACGGCTCTGTCCCACT
R:
AGTCCCGTAGTACAGTGAGGG
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]