GgaEX0014519 @ galGal3
Exon Skipping
Gene
ENSGALG00000009824 | C2orf77
Description
NA
Coordinates
chr7:20070216-20074612:+
Coord C1 exon
chr7:20070216-20070322
Coord A exon
chr7:20072153-20072425
Coord C2 exon
chr7:20074220-20074612
Length
273 bp
Sequences
Splice sites
3' ss Seq
CATCTAATTGTTCTTTACAGTTG
3' ss Score
8.31
5' ss Seq
AGGGTAGTA
5' ss Score
1.04
Exon sequences
Seq C1 exon
GCAGAGAAACAGGCAAAAAAACAGCAGGAAAAACAAGCGGACTTGGACTACGATGCTCAGAGAGAAGCCACCTTTCATTAAGAGCAAAAATTTCAGAGATAAAGACA
Seq A exon
TTGTCCTCCATGAAAGGCAAGAATGGAAATCTTGCAAGAATAATACAGAAGACTAAAGTAATTTTTATGTTTGATATGTTGAAGAACACAAAGGAAGAAGAAAAGACTGGGAAGAAATTCAAAGAACAATTCCCTGTGCAAGTAGAAGCACATGAAAGCTATTGAACAGCCTGAGATGATAAATAAATGAAACAGTGAGAAAGTTCAGCTCACTCAGTCTGGCAAGGAAGAAGCTCAGGAGAGAGCTAGGAGCAGCCTGCAGCTGTTGGAAGG
Seq C2 exon
AAATACGTCTGACAAGTATAGAAGCACCTACAAACCAATAAGAAGCTATAGCCACTCTGCAAAACCTACCAGTGCCTAACAGCTGAAGCCAATTGGAACACATAACAAGACATGCAATGTGCTGGAACCTGCCTATATTCAGCTTCAGCTCAGGAAACAATTACTGTATCTACAGCCATAGGCTTCAATAAGCAATTGTAATAGTAATTACTGTACTTTTATTATGAAGCACAGCAGAAGATTCACTTTGAGGAAGTCAAGAGGTAAAAACCTAAATGTGATTTAAACTTGACATCTGTGCTGTGCTCCTTGAGTATTACTGGGCTTCAAAGCTTAATTAAAACCTTGTGTTGTGGCTTTAAGAAAACCTGAATAATAAAACTGAGTAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009824-'18-24,'18-23,19-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTCAGAGAGAAGCCACCT
R:
AGTGAATCTTCTGCTGTGCTTCA
Band lengths:
302-575
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]