GgaINT0048332 @ galGal3
Intron Retention
Gene
ENSGALG00000009824 | C2orf77
Description
NA
Coordinates
chr7:20070216-20074612:+
Coord C1 exon
chr7:20070216-20070322
Coord A exon
chr7:20070323-20074219
Coord C2 exon
chr7:20074220-20074612
Length
3897 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
TTTCTTTCTTTCTTCTTCAGAAA
3' ss Score
11.84
Exon sequences
Seq C1 exon
GCAGAGAAACAGGCAAAAAAACAGCAGGAAAAACAAGCGGACTTGGACTACGATGCTCAGAGAGAAGCCACCTTTCATTAAGAGCAAAAATTTCAGAGATAAAGACA
Seq A exon
GTGAGTAACTTAATGTGTCACGAATGCATGTAACTTTTATTCTCCCTGCCAAGCATCCAGGGTGGTAACAAGGCTCGGATTTAGGCCTCCTAAGTAAGTTTTATTCCTTTTTTTTTAATTATTCTTTTTTAAATCAGAATTAGTATGGGATACTGCTGGAACTCAGCTACATCAGTGTGGCTGAACTACTACTTCAGAAAAGGTGCTTCAGAAAAGAAAATGTACAAAGGAACATTAAGGGTATTCAGCAAGAATTCATAAAATATCAGCTGAAGATTGTAAAATTAAATGAGTGTTTATTCAGTATACTAAAAAAAAAAAGGCTTGTGTAGCACTATCCCCATCCTTCCTTGACAAATGTATGTGAGCTGCTGTCTTGATCAGACACAGAGCGAATTCTTGGAATTGGGCAACGATGTTGAGACTTACGTGCCCTTCAAATCCCTCTGCAAGAACACAGCCAGGACTCAGAGCACAGTCCCAGGTATTGCTGGGGGCAGCTGAGCTGTTTCTGGACAGCAGGACATAGCTAAGTACAGCTAATTCTTTGTATCCACTTTAGTCAGTGCAGCAAAAGGGGCTGGTTGTGGAATGAAGAAGCTGCTGCTGAGAACATCATTCACGATGCATGTATTTTTGGGGCATTTGCACAAAGTAGGAGTAGTTTGGGGTCATGGCTCAGTACTCATCACTGTTTGGAGCATATCTTCCTTCTTAAGTTTTCATCCAAAAGGTTCCAGTTTGTCATTACTCTGAAATGTGAAAAGCACAGTAAATAGGAACAACCAGAACAACCAAGAGATCTATCTCAAAACTCGTTTCTCATCTACAGAAAAATGCTAATATTGCTGAACTGTCAGCTAAGTCATACAGCGTTCCTTCCAATTATCTTGGAATAACTGATTTGTTTGGAAATAACCTTTTTCTTTTGGGGGAAAAAGAGGCATGGCAATTAGCTTCTGAAATAGTCTCTCAATCCTTGTATACTTTTTTTTTTTTTAGATCACTAATGAAAAATTTATTTCCCCTCTCTCTGAGCTAGTGCTCTTTTAATTACCTCAAGCTTTTTTTCAGCAAAGAATGGAAACTTTTAATAAAGTCTTTTGATGGCAGAAGCTGAAACCTTGAGAAGAAGCACTGACTACAGTAAGACTTGTACTGAAGTCTGCAGAGCTTGATAATGCTCCAAATGCATACCCAAGTGCACATTTGCACATGCTCACAATTGGTGAGTTAAACGTGCAATTGGTGAGTTAAACGTGCAATTGGTGAGTTAAACGTGCAATTGGTGAGTTAAACGTGCAATTGGTGAGTTAAACGTGCAATTGGTGAGTTAAATGATTTTAGTCTACTTTCACAGCAACAAGAAGTAAGGTGGATTGCAGCCTCACCTCCTAATTAGCTTTAAATAAAAAAAAAAAATCAAAAGCCCTGTTCTGTAGATTGTGTGCATTTGAAATCCACATTTCCATGGGGCTTATACCCCTTTTTCTTGGAGTGTCTACAGAAATACCAAATTCAACTACCAGAAAGCAATTCATCCTTTCAGTTTACCTACAGTGAAATAAGCATCTAGGGTAGTTTTTAAAACACACTGGCTAAATGTGGATTCAGTTGTTTGTTTCAACATTAGAAAAGCATTAATCAGTGATATTGCATTGACTTCCAAAGGTGTGTATGCTTTGTGTGCTTGCTTAAATGACTAACTCTCGTTAGTGATCCCTATAAAAGAGCAAAGAAGTTGTTTTAGCAACATGAAGAAGTAAATAGTTGAGGTTCTAGAATTTTTAGTGACGAAACATTATGATAACATCTAATTGTTCTTTACAGTTGTCCTCCATGAAAGGCAAGAATGGAAATCTTGCAAGAATAATACAGAAGACTAAAGTAATTTTTATGTTTGATATGTTGAAGAACACAAAGGAAGAAGAAAAGACTGGGAAGAAATTCAAAGAACAATTCCCTGTGCAAGTAGAAGCACATGAAAGCTATTGAACAGCCTGAGATGATAAATAAATGAAACAGTGAGAAAGTTCAGCTCACTCAGTCTGGCAAGGAAGAAGCTCAGGAGAGAGCTAGGAGCAGCCTGCAGCTGTTGGAAGGGTAGTACAGCTAAAGCAGAGCCAAGCTCTTCTTGGAACTGTCAGATGATTGATATAACAGATTATTATGTGGGAGACCAGGTTGATTGTAATGAAACACCATGTTCATGCTGAAAGAGGTTAAAATTGGATCATTTTGGCTATAATGGTGGTCAGCTATCACCTGAGAAGGCTTTGAAATGTTCACATTTAAAGCAGGAGGTCAGTCTAGCTGACCACCAGTGGTCCTTTTCAACAACAACTTAAAAGATGGCAAGAGAATACAGTTAGCAAAAATACTGGTAAGCGGAGACAAATAATTGACCTGGAAAATCTGCTGAGAGGTATCTCTAGTCTAATGCCAAGTGTCACTGCATATTTTTATTAGCTAAAGTTGCAATTTATAGTTAGCAAATCAGAATATGCTTTGAGAAATAACTTGGCTACTAAACATGAATTACTGATTTTGCTCAACAGAGCCTCCTCTCAGCTGCTGCACTGCCTTGCTTCAGGAAGTCATAGACACATGCACATAACTTAACAGGTATTGGTCTTCTAAGAAGGCCAGGAAATGCAGGGTGGTCCCAGAGGGACTGATACAGACAACTTAAACTGTGTTTTTTTTTCAAATGTGTCACCCAACTCTGTGGAAATAGATTGTTAAATTAAGTGCTTACCTCCAGGGTCAAATGTGATTTTCCAGCACAATGCCATAAGTCTGATGCCTGTATGGCTATAGCAATAGTCTCGTCAGATCGAATTCTGACACAAAAAATGGAATAGAGGAGCTTTTTAAATACCTCATCCTAGGTAGATTTAAGTTAATCATCTGTGCAGTTCTGTACTGTCAAGTGGTGATCTGGGCTAGAGTTTACTAGTTCTAACATTACAGGCTGCTACTGCTCAACTCAGAGGAAGGATGAAGATGACACCTAACTGGAACCAAACTTCTACTGAAGAGAAGAGTTGGCACCACAGGGCAATTACGAATGGACACTTTCATTTGTCACTATAGACTGGCCATATATAACTCTTCTGAAATTTTTTTCAAAACTTAACGGTGGTTTTAGGTCAATGAATTTTTTGTTTTAATGGCTAAGTTCTTTTAGGTTTGTTATTTACTTATACCTTTTTTGTATTTGTAACACTCTCCCATTTCAAGTGATGTAATCTTCCTCCTTTGTCTGGTAATTCATCTTTGTCTCTGCTGAATCTTCATTCTTGTTCTGGCAGTGCATCCTTTTCTCTGGTAGAGAATCTTCCTTTTAGTTCTAAATAGCTCAAAAAAAAAAAAGACTTCAGAGGCAGTTAAAGTGAAAGGTAGTGCTACGATAAGACTGTACGAGATACCCTTCTTTAATTCCTTCTATTTAATGCGTTGTGCTATGTTTCTAAATTTGGACTCCGTAGTTATTCCACTTACGCTCCTGTACTGCCACCAGTGCAATCTAAGCTTCCTTTATGGCCTAGTAAATGATTCAAACCTGCTATTTAATGAATTAAACCAATCTTTTAAAAGATCTAAAACAGCTTTAAAACATAGCTGATTGTAGCTACTTGATACTATCCCTATATAAACCAGCATCATATATATATATATATTTACAAAATCTGGAAACTACGCATCCAGCAACTGGAACAGGGGCATGGCAGACAAGTGGAATTTGGACTGTCTTTGGCAAAGCTTAGTATTACATTACTGCTGTAGGGCAATTACTATTGTTTCAATTACAACCCATCAATTCATATACATTCAATTGTATAGTAGTTACAAATTACACAGCAGGACTTAAAACTTTCTTTCTTTCTTCTTCAG
Seq C2 exon
AAATACGTCTGACAAGTATAGAAGCACCTACAAACCAATAAGAAGCTATAGCCACTCTGCAAAACCTACCAGTGCCTAACAGCTGAAGCCAATTGGAACACATAACAAGACATGCAATGTGCTGGAACCTGCCTATATTCAGCTTCAGCTCAGGAAACAATTACTGTATCTACAGCCATAGGCTTCAATAAGCAATTGTAATAGTAATTACTGTACTTTTATTATGAAGCACAGCAGAAGATTCACTTTGAGGAAGTCAAGAGGTAAAAACCTAAATGTGATTTAAACTTGACATCTGTGCTGTGCTCCTTGAGTATTACTGGGCTTCAAAGCTTAATTAAAACCTTGTGTTGTGGCTTTAAGAAAACCTGAATAATAAAACTGAGTAAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009824:ENSGALT00000015986:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]