GgaEX0014590 @ galGal3
Exon Skipping
Gene
ENSGALG00000009864 | Q805B1_CHICK
Description
NA
Coordinates
chr3:23426537-23431689:-
Coord C1 exon
chr3:23431653-23431689
Coord A exon
chr3:23430162-23430253
Coord C2 exon
chr3:23426537-23426686
Length
92 bp
Sequences
Splice sites
3' ss Seq
GTAACTTTCTCTTGGGTTAGGAG
3' ss Score
4.98
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
CATTTTCTCTTCGCTGAGGATCGGCTACAGATTTCAG
Seq A exon
GAGGAGTGGTGATGATCCAGCAGTGATATCAGGCGGCATCACCTGCTTTTTTTTTCTCTATGACTCAATATAATCTGCTGCATCTTCGAAAG
Seq C2 exon
GCGAGGTTAATGTAGCCAAGAACTGACATATAATTAAGTATAATTTTGGAAAAAATGAGATTATAGTCTACCGCTATAAATGAATGATCATCTGGAAAAAGAAGGATGACAAGATAGTGGGCTTTGGGTCTTTTAACACCTAAACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009864-'1-3,'1-2,2-3
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTCTTCGCTGAGGATCGG
R:
GGTGTTAAAAGACCCAAAGCCC
Band lengths:
174-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]