GgaALTD0007084-1/2 @ galGal3
Alternative 5'ss
Description
NA
Coordinates
chr3:23415455-23429418:+
Coord C1 exon
chr3:23415455-23415555
Coord A exon
NA
Coord C2 exon
chr3:23429278-23429418
Length
0 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGTA
5' ss Score
-0.15
3' ss Seq
CTCTTTTCTCTCACGTGAAGGTT
3' ss Score
8.37
Exon sequences
Seq C1 exon
GCGGGAGGCGGTGTTCCCCGGCCCGGCAACGCGTCACGGCCCGCCCGGCACCGCCCATAGCAACGCCTGCCCACCGACGGGATGAACGGCACTCTGGAAAG
Seq A exon
NA
Seq C2 exon
GTTCCCAAGAGAGGTAAATCACATTGCCACGTGAGTTATGAGTACACGAGCCACTACAGCAAGCTGCAGCACCCAAACATCCAGGACAGCCAGCGCAACACACGGGCACTGAACACCACTAAGTCTTTAAAACTGAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023346-0-3,1-3-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.980 A=NA C2=0.788
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGAACGGCACTCTGGAAA
R:
GATGTTTGGGTGCTGCAGCTT
Band lengths:
103-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]